JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNPO1_chr5_72811661_72919388	0/0	t0012	5791	2	0	2	0	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0013	5792	2	2	0	0	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0014	5792	2	2	0	0	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0015	5792	2	0	0	2	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0016	5793	2	2	0	0	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0017	5792	2	1	1	0	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0018	5792	2	0	0	2	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0019	5792	1	0	1	0	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0020	5791	1	0	0	0	0	1	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0021	5792	1	1	0	0	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0022	5792	1	0	0	0	0	1	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0023	5792	1	1	0	0	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0024	5792	1	0	0	1	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0025	5792	1	1	0	0	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0026	5792	1	0	0	1	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0027	5792	1	0	0	1	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0028	5792	1	0	0	1	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0029	5792	1	0	0	1	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0030	5793	1	0	1	0	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0031	5793	1	0	0	1	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0032	5792	1	0	0	1	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0033	5793	1	0	0	1	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0034	5794	1	1	0	0	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0035	5793	1	1	0	0	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0036	5793	1	1	0	0	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	t0037	5792	1	1	0	0	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO2_chr19_12694201_12728932	1/0	t0001	2358	144	23	26	70	6	18	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/1	t0002	2359	46	2	15	18	3	7	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0003	2353	22	20	2	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0004	2357	17	0	4	10	1	2	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0005	2358	10	0	1	6	0	3	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0006	2358	8	2	2	1	1	2	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0007	2359	8	8	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0008	2354	7	7	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0009	2353	6	5	1	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0010	2358	5	0	2	3	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0011	2357	4	0	0	1	1	2	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0012	2359	4	0	1	3	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0013	2358	4	4	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0014	2358	3	0	0	3	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0015	2357	3	2	1	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0016	2358	2	1	1	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0017	2357	2	2	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0018	2358	2	0	0	0	2	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0019	2360	2	2	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0020	2353	2	2	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0021	2358	2	0	0	2	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0022	2358	1	0	0	0	0	1	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0023	2353	1	1	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0024	2358	1	1	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932