JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNPO2_chr19_12694201_12728932	0/0	t0025	2358	1	0	0	1	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0026	2359	1	0	0	0	0	1	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0027	2358	1	0	0	1	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0028	2358	1	0	1	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0029	2359	1	1	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0030	2358	1	0	1	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0031	2359	1	1	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0032	2360	1	1	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0033	2353	1	1	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0034	2342	1	0	0	1	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0035	2358	1	1	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0036	2358	1	1	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0037	2359	1	0	1	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	t0038	2358	1	0	1	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO3_chr7_128949185_129060111	1/0	t0001	1574	102	20	18	56	2	5	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	t0002	1574	92	35	13	31	3	10	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/1	t0003	1574	74	6	14	42	1	10	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	t0004	1574	31	8	1	18	0	4	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	t0005	1574	27	10	9	1	2	5	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	t0006	1574	3	3	0	0	0	0	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	t0007	1574	3	3	0	0	0	0	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	t0008	1574	3	0	3	0	0	0	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	t0009	1574	2	2	0	0	0	0	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	t0010	1574	1	1	0	0	0	0	copy fasta	TNPO3	chr7	128949185	129060111
TNRC18_chr7_5301811_5428834	0/0	t0001	1935	61	28	14	10	5	4	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0002	1934	55	6	1	38	1	9	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/1	t0003	1934	38	8	13	2	7	7	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0004	1934	21	6	9	6	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0005	1935	19	6	11	1	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0006	1935	12	1	1	7	0	3	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0007	1933	12	0	1	10	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	1/0	t0008	1933	11	0	3	0	1	6	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0009	1936	6	4	1	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0010	1934	5	0	0	5	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0011	1935	5	5	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0012	1939	5	5	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0013	1934	5	5	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0014	1936	4	3	0	0	1	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0015	1934	4	0	0	0	0	4	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0016	1923	4	4	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0017	1934	3	0	2	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0018	1934	3	0	1	1	1	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0019	1933	3	3	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0020	1935	3	0	3	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0021	1934	2	0	2	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0022	1936	2	2	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0023	1934	2	1	0	0	1	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0024	1935	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0025	1933	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0026	1934	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834