JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTBD19_chr1_44803523_44820585	0/0	t0024	2120	3	0	0	3	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0025	2100	3	1	0	1	0	1	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0026	2144	3	2	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0027	2128	3	3	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0028	2128	3	3	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0029	2124	3	3	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0030	2116	3	3	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0031	2103	3	0	0	3	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0032	2136	3	0	1	1	0	1	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0033	2120	3	3	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0034	2117	3	0	1	2	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0035	2114	3	0	0	3	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0036	2127	3	1	0	2	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0037	2088	2	0	0	2	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0038	2132	2	0	0	2	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0039	2127	2	0	2	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0040	2123	2	0	0	0	1	1	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0041	2110	2	2	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0042	2120	2	2	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0043	2103	2	2	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0044	2116	2	0	2	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0045	2116	2	2	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0046	2120	2	2	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0047	2116	2	2	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0048	2116	2	2	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0049	2112	2	2	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0050	2100	2	2	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0051	2147	2	0	0	0	0	2	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0052	2112	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0053	2100	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0054	2112	1	1	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0055	2128	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0056	2114	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0057	2118	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0058	2126	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0059	2120	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0060	2116	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0061	2116	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0062	2108	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0063	2113	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0064	2101	1	1	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0065	2092	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0066	2093	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0067	2151	1	0	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0068	2140	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0069	2168	1	0	0	0	0	1	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0070	2128	1	0	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0071	2155	1	1	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0072	2132	1	1	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0073	2136	1	1	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585