JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNRC6B_chr22_40172925_40340808	0/1	t0023	12784	2	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0024	12784	2	2	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0025	12785	2	0	2	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	1/0	t0026	12779	2	0	0	0	1	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0027	12786	2	0	0	2	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0028	12784	2	0	0	2	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0029	12785	2	0	0	2	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0030	12785	2	0	1	0	0	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0031	12785	2	0	1	0	0	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0032	12781	2	0	0	0	0	2	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0033	12784	2	1	0	0	0	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0034	12784	2	2	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0035	12782	2	2	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0036	12785	2	2	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0037	12783	2	0	0	0	0	2	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0038	12786	2	0	1	0	0	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0039	12782	2	0	1	0	0	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0040	12785	2	0	2	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0041	12782	1	0	0	0	0	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0042	12782	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0043	12783	1	0	0	0	0	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0044	12783	1	0	1	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0045	12785	1	0	0	0	1	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0046	12781	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0047	12781	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0048	12784	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0049	12781	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0050	12785	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0051	12784	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0052	12784	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0053	12782	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0054	12784	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0055	12785	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0056	12785	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0057	12786	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0058	12786	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0059	12777	1	0	1	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0060	12778	1	0	1	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0061	12784	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0062	12784	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0063	12785	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0064	12783	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0065	12783	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0066	12784	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0067	12783	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0068	12786	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0069	12785	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0070	12784	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0071	12785	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0072	12786	1	0	0	0	1	0	copy fasta	TNRC6B	chr22	40172925	40340808