JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNRC6B_chr22_40172925_40340808	0/0	t0123	12786	1	0	0	0	0	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0124	12785	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0125	12787	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0126	12780	1	0	1	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0127	12786	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0128	12784	1	0	0	0	0	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0129	12784	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0130	12785	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0131	12786	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0132	12785	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0133	12785	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0134	12786	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0135	12786	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0136	12783	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0137	12784	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0138	12783	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0139	12784	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0140	12787	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0141	12786	1	0	0	0	1	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0142	12786	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0143	12787	1	0	1	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0144	12783	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0145	12785	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0146	12782	1	0	0	0	0	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0147	12782	1	0	0	0	0	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0148	12784	1	0	0	0	0	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0149	12784	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0150	12786	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0151	12782	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0152	12785	1	0	1	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0153	12784	1	0	1	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0154	12782	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0155	12786	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0156	12787	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0157	12783	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6C_chr17_77953703_78113822	0/0	t0001	4581	111	24	26	49	4	8	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0002	4579	25	5	3	14	1	2	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0003	4585	23	4	4	14	0	1	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0004	4581	13	6	4	2	0	1	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0005	4582	9	6	0	3	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0006	4579	6	6	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0007	4584	5	0	0	5	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0008	4580	4	0	1	1	0	2	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0009	4580	4	0	0	4	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0010	4588	3	3	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0011	4576	3	3	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0012	4583	3	3	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0013	4580	3	3	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0014	4578	3	3	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0015	4581	3	1	2	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822