JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNRC6C_chr17_77953703_78113822	0/0	t0016	4581	3	0	2	0	0	1	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0017	4580	2	2	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0018	4579	2	2	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0019	4580	2	0	1	0	0	1	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0020	4584	2	0	0	2	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0021	4582	2	0	0	2	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0022	4585	2	0	0	2	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0023	4582	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0024	4580	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0025	4583	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0026	4576	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0027	4579	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0028	4580	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0029	4581	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0030	4581	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0031	4580	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0032	4581	1	0	0	0	0	1	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0033	4580	1	0	0	0	0	1	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0034	4581	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0035	4579	1	0	1	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0036	4581	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	1/0	t0037	4581	1	0	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0038	4578	1	0	1	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0039	4578	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0040	4580	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0041	4580	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0042	4580	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0043	4581	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0044	4582	1	0	1	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0045	4580	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0046	4581	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0047	4581	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0048	4581	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0049	4579	1	0	0	0	0	1	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0050	4579	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0051	4581	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0052	4578	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0053	4578	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0054	4581	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0055	4586	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0056	4586	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0057	4586	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0058	4585	1	0	0	0	1	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0059	4579	1	0	0	0	0	1	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0060	4582	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/1	t0061	4578	1	0	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0062	4578	1	0	0	0	0	1	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0063	4581	1	0	0	0	0	1	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0064	4581	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	t0065	4581	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822