JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNR_chr1_175310194_175748595	0/0	t0001	8696	13	1	4	6	0	2	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/1	t0002	8702	8	2	1	1	0	3	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0003	8706	8	6	2	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0004	8716	5	5	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0005	8704	5	1	1	3	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0006	8688	5	5	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0007	8688	4	4	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0008	8698	4	4	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0009	8712	3	0	3	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0010	8704	3	0	1	2	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0011	8702	3	0	0	2	0	1	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0012	8712	2	2	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0013	8710	2	2	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0014	8708	2	0	2	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0015	8702	2	0	2	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0016	8700	2	0	0	0	0	2	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0017	8700	2	0	0	2	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0018	8698	2	0	0	1	0	1	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0019	8690	2	2	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0020	8712	2	2	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0021	8700	2	2	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	1/0	t0022	8698	2	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0023	8696	2	1	1	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0024	8700	2	0	1	0	1	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0025	8712	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0026	8708	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0027	8696	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0028	8706	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0029	8698	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0030	8718	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0031	8700	1	0	0	1	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0032	8698	1	0	0	1	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0033	8694	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0034	8680	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0035	8714	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0036	8706	1	0	0	1	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0037	8684	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0038	8696	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0039	8704	1	0	0	0	1	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0040	8698	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0041	8704	1	0	0	1	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0042	8710	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0043	8704	1	0	1	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0044	8702	1	0	0	1	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0045	8702	1	0	0	0	0	1	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0046	8702	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0047	8702	1	0	1	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0048	8702	1	0	0	0	0	1	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0049	8700	1	0	0	0	0	1	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0050	8696	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595