JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNR_chr1_175310194_175748595	0/0	t0051	8702	1	0	1	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0052	8698	1	0	0	1	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0053	8708	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0054	8692	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0055	8706	1	0	0	0	0	1	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0056	8706	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0057	8702	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0058	8702	1	0	0	1	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0059	8708	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0060	8696	1	0	1	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0061	8700	1	0	0	0	1	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0062	8696	1	0	0	0	0	1	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0063	8700	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0064	8710	1	0	0	0	1	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0065	8708	1	0	0	0	1	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0066	8708	1	0	1	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0067	8704	1	0	0	0	1	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0068	8708	1	0	1	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	t0069	8688	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNS1_chr2_217794791_218007995	0/0	t0001	4792	18	2	2	6	0	8	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	1/0	t0002	4792	14	0	8	3	0	2	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0003	4792	11	0	0	9	0	2	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0004	4792	10	1	2	4	0	3	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0005	4792	8	0	2	4	1	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0006	4792	7	1	3	2	1	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0007	4798	7	6	1	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0008	4792	6	1	0	4	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0009	4792	5	0	0	5	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0010	4792	5	1	0	2	0	2	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0011	4792	5	0	0	5	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0012	4792	5	5	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0013	4792	4	0	0	2	0	2	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0014	4794	4	4	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0015	4796	4	0	3	1	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0016	4786	3	3	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0017	4792	3	0	1	2	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0018	4792	3	1	0	2	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0019	4792	3	0	2	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0020	4794	3	3	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0021	4796	3	0	2	0	1	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0022	4796	3	3	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0023	4798	3	1	2	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0024	4786	2	2	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0025	4792	2	0	0	2	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0026	4792	2	0	0	2	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0027	4792	2	0	1	1	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0028	4792	2	0	1	0	1	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0029	4792	2	0	0	1	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0030	4792	2	2	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0031	4792	2	2	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995