JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
BTBD19_chr1_44803523_44820585	0/0	t0074	2135	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0075	2132	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0076	2109	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0077	2124	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0078	2131	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0079	2101	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0080	2101	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0081	2127	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0082	2112	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0083	2114	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0084	2111	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0085	2107	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0086	2099	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0087	2095	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0088	2128	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0089	2137	1	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0090	2112	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0091	2118	1	0	0	0	1	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0092	2115	1	0	0	0	1	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0093	2124	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0094	2129	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0095	2125	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0096	2120	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0097	2124	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0098	2120	1	0	0	0	1	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0099	2117	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0100	2112	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0101	2112	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0102	2108	1	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0103	2113	1	0	0	0	1	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0104	2114	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0105	2112	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0106	2108	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0107	2134	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0108	2112	1	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0109	2104	1	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0110	2109	1	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0111	2109	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0112	2104	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0113	2105	1	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0114	2130	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0115	2105	1	0	0	0	1	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0116	2104	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0117	2126	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0118	2096	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0119	2096	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0120	2096	1	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0121	2096	1	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0122	2092	1	0	0	0	1	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0123	2134	1	0	0	1	0	copy fasta	BTBD19	chr1	44803523	44820585