JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNS1_chr2_217794791_218007995	0/0	t0082	4794	1	0	0	1	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0083	4794	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0084	4794	1	0	0	0	1	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0085	4794	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0086	4794	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0087	4796	1	0	0	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0088	4796	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0089	4796	1	0	0	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0090	4796	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0091	4796	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0092	4796	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0093	4796	1	0	1	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/1	t0094	4796	1	0	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0095	4798	1	0	0	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0096	4798	1	0	0	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0097	4798	1	0	0	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0098	4798	1	0	0	0	1	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0099	4798	1	0	0	0	1	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0100	4798	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0101	4798	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0102	4779	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0103	4798	1	0	1	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0104	4802	1	0	1	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0105	4802	1	0	1	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0106	4798	1	0	0	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0107	4792	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0108	4792	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0109	4792	1	0	0	1	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0110	4792	1	0	1	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0111	4792	1	0	0	1	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0112	4792	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0113	4792	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0114	4792	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0115	4794	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0116	4794	1	0	0	1	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	t0117	4796	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS2_chr12_53045065_53069379	1/0	t0001	619	312	64	63	139	8	37	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	t0002	619	39	1	1	36	1	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/1	t0003	619	33	20	3	1	1	7	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	t0004	619	9	9	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	t0005	619	5	0	0	5	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	t0006	619	2	0	2	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	t0007	619	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	t0008	619	1	0	1	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	t0009	619	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	t0010	619	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	t0011	619	1	0	1	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	t0012	619	1	0	1	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS3_chr7_47270154_47587111	1/0	t0001	3248	20	7	0	8	1	3	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0002	3248	18	3	0	13	0	2	copy fasta	TNS3	chr7	47270154	47587111