JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNS3_chr7_47270154_47587111	0/0	t0003	3248	14	6	5	2	1	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0004	3248	12	0	7	4	1	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0005	3248	12	3	4	2	0	3	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0006	3248	10	0	2	4	2	2	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0007	3248	9	3	2	1	0	3	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0008	3248	8	5	0	0	0	3	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0009	3248	7	3	1	2	1	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/1	t0010	3248	6	5	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0011	3248	5	0	2	0	1	2	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0012	3248	4	4	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0013	3248	3	1	2	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0014	3248	3	0	1	0	0	2	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0015	3248	3	0	2	0	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0016	3248	3	2	0	0	1	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0017	3248	2	2	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0018	3248	2	0	0	0	0	2	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0019	3248	2	2	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0020	3248	2	2	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0021	3248	2	0	0	0	2	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0022	3248	2	0	0	0	1	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0023	3248	2	2	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0024	3248	2	1	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0025	3248	2	2	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0026	3248	2	2	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0027	3248	2	2	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0028	3248	2	1	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0029	3248	2	1	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0030	3248	2	0	2	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0031	3248	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0032	3248	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0033	3248	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0034	3248	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0035	3248	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0036	3248	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0037	3238	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0038	3248	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0039	3238	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0040	3248	1	0	0	0	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0041	3248	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0042	3248	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0043	3248	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0044	3248	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0045	3248	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0046	3248	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0047	3248	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0048	3248	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0049	3248	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0050	3248	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0051	3248	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0052	3248	1	0	0	0	0	1	copy fasta	TNS3	chr7	47270154	47587111