JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNS3_chr7_47270154_47587111	0/0	t0053	3248	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0054	3248	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0055	3248	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0056	3248	1	0	0	0	1	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0057	3248	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0058	3238	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0059	3248	1	0	0	0	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0060	3248	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	t0061	3248	1	0	0	0	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS4_chr17_40470834_40506623	0/0	t0001	1936	28	3	2	13	3	7	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	1/0	t0002	1940	24	1	3	19	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0003	1938	24	2	3	14	0	5	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0004	1936	22	2	1	16	2	1	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0005	1923	20	19	1	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0006	1946	18	1	1	10	2	4	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0007	1942	17	3	2	9	0	3	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0008	1938	17	3	9	2	0	3	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0009	1934	15	5	0	8	0	2	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0010	1944	14	0	4	8	0	2	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0011	1925	14	14	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0012	1934	14	0	7	6	0	1	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0013	1937	14	4	3	0	4	3	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/1	t0014	1948	12	0	2	8	0	1	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0015	1950	10	1	5	3	0	1	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0016	1932	9	1	2	6	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0017	1930	7	0	2	4	0	1	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0018	1932	7	0	3	2	1	1	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0019	1954	6	0	2	4	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0020	1940	6	2	1	1	1	1	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0021	1933	5	0	2	0	1	2	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0022	1956	4	0	3	1	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0023	1952	4	1	1	1	0	1	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0024	1938	4	0	0	4	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0025	1935	4	1	2	0	1	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0026	1937	3	0	0	3	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0027	1923	3	3	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0028	1921	3	3	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0029	1930	3	0	1	0	1	1	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0030	1925	3	3	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0031	1958	2	0	2	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0032	1936	2	0	0	2	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0033	1935	2	0	0	2	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0034	1935	2	0	1	0	0	1	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0035	1931	2	0	2	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0036	1927	2	0	1	0	0	1	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0037	1927	2	2	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0038	1944	2	1	0	0	0	1	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0039	1942	2	0	2	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0040	1928	2	0	2	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0041	1935	2	0	0	2	0	0	copy fasta	TNS4	chr17	40470834	40506623