JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNS4_chr17_40470834_40506623	0/0	t0042	1936	2	2	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0043	1933	2	2	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0044	1940	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0045	1926	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0046	1939	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0047	1940	1	0	0	1	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0048	1960	1	0	1	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0049	1926	1	0	0	0	1	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0050	1924	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0051	1910	1	0	0	1	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0052	1942	1	0	0	0	1	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0053	1936	1	0	0	1	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0054	1939	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0055	1929	1	0	0	0	0	1	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0056	1929	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0057	1925	1	0	0	0	0	1	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0058	1925	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0059	1946	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0060	1936	1	0	1	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0061	1923	1	0	0	0	0	1	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0062	1924	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0063	1919	1	0	0	1	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0064	1938	1	0	0	1	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0065	1945	1	0	1	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0066	1931	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0067	1931	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0068	1937	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0069	1935	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0070	1933	1	0	1	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0071	1937	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0072	1935	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0073	1931	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0074	1940	1	0	0	1	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	t0075	1938	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNXB_chr6_32036153_32114338	0/1	t0001	363	244	55	39	115	7	27	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	t0002	363	146	29	34	61	10	12	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	t0003	363	5	1	3	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	t0004	363	3	3	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	t0005	363	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	t0006	363	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	t0007	363	1	0	0	0	1	0	copy fasta	TNXB	chr6	32036153	32114338
TOB1_chr17_50857223_50871354	1/0	t0001	1201	179	31	33	96	7	11	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0002	1208	112	15	20	62	4	11	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/1	t0003	1207	39	10	13	6	1	8	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0004	1209	27	10	4	9	2	2	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0005	1201	17	7	1	9	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0006	1195	7	0	0	0	0	7	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0007	1202	6	1	1	4	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0008	1206	6	5	1	0	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0009	1206	4	4	0	0	0	0	copy fasta	TOB1	chr17	50857223	50871354