JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TOB1_chr17_50857223_50871354	0/0	t0010	1207	4	3	1	0	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0011	1201	3	2	0	0	0	1	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0012	1205	3	3	0	0	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0013	1207	2	2	0	0	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0014	1202	2	0	0	2	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0015	1201	1	1	0	0	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0016	1200	1	0	1	0	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0017	1201	1	0	1	0	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0018	1201	1	1	0	0	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0019	1206	1	1	0	0	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0020	1208	1	0	0	1	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0021	1211	1	0	0	1	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0022	1208	1	1	0	0	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	t0023	1208	1	1	0	0	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB2_chr22_41428494_41451801	0/1	t0001	3303	137	9	20	81	8	18	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0002	3303	79	17	3	57	0	2	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	1/0	t0003	3303	57	2	27	14	2	11	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0004	3303	26	23	3	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0005	3307	8	8	0	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0006	3302	5	5	0	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0007	3307	5	4	1	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0008	3303	4	2	1	0	1	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0009	3303	4	3	1	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0010	3303	4	4	0	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0011	3303	3	2	1	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0012	3303	3	0	0	3	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0013	3303	3	2	1	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0014	3297	2	2	0	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0015	3303	2	0	0	1	0	1	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0016	3303	2	0	2	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0017	3297	1	1	0	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0018	3303	1	0	0	1	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0019	3303	1	0	1	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0020	3303	1	1	0	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0021	3303	1	0	0	1	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0022	3303	1	0	0	0	0	1	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0023	3303	1	0	0	0	0	1	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0024	3303	1	0	1	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0025	3303	1	1	0	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0026	3303	1	0	0	1	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0027	3303	1	1	0	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0028	3303	1	0	0	1	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0029	3303	1	0	0	0	1	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0030	3303	1	1	0	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0031	3303	1	1	0	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	t0032	3303	1	1	0	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOE1_chr1_45335170_45348973	1/1	t0001	355	392	91	74	173	18	34	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	t0002	356	14	0	0	14	0	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	t0003	355	1	0	0	1	0	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	t0004	355	1	1	0	0	0	0	copy fasta	TOE1	chr1	45335170	45348973