JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TOGARAM1_chr14_44957190_45079431	1/1	t0001	1103	111	46	14	33	4	12	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	t0002	1103	58	27	3	24	3	1	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	t0003	1103	3	0	1	0	1	1	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	t0004	1103	2	2	0	0	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	t0005	1103	1	0	0	1	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	t0006	1103	1	1	0	0	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	t0007	1103	1	0	0	0	0	1	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	t0008	1103	1	0	0	0	0	1	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM2_chr2_28976298_29057230	1/1	t0001	489	251	54	38	116	11	30	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	t0002	489	69	18	17	27	1	6	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	t0003	489	18	11	7	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	t0004	489	2	2	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	t0005	489	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	t0006	489	1	0	0	1	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOLLIP_chr11_1269371_1314632	1/0	t0001	2803	167	36	33	83	2	12	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0002	2803	86	24	15	32	2	13	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0003	2803	19	1	5	2	2	9	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0004	2803	19	9	5	0	1	4	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0005	2803	14	6	6	0	1	1	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0006	2803	4	0	1	0	0	3	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0007	2803	4	0	0	0	3	1	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0008	2803	4	0	3	0	1	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0009	2803	3	3	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0010	2803	3	0	0	3	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0011	2803	2	2	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0012	2803	2	0	0	2	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0013	2803	2	2	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0014	2803	2	0	0	2	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0015	2803	1	0	1	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0016	2803	1	1	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0017	2803	1	1	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0018	2803	1	1	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0019	2803	1	0	0	0	1	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0020	2803	1	1	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0021	2803	1	0	0	0	1	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0022	2803	1	0	1	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0023	2803	1	1	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0024	2803	1	0	1	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0025	2803	1	1	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0026	2803	1	1	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/1	t0027	2803	1	0	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0028	2803	1	0	1	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0029	2803	1	0	0	0	0	1	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0030	2803	1	1	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	t0031	2803	1	1	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOM1L1_chr17_54895852_54966956	1/1	t0001	737	223	27	34	137	4	19	copy fasta	TOM1L1	chr17	54895852	54966956
TOM1L1_chr17_54895852_54966956	0/0	t0002	737	104	35	19	31	5	14	copy fasta	TOM1L1	chr17	54895852	54966956
TOM1L1_chr17_54895852_54966956	0/0	t0003	737	39	5	16	12	3	3	copy fasta	TOM1L1	chr17	54895852	54966956
TOM1L1_chr17_54895852_54966956	0/0	t0004	737	21	21	0	0	0	0	copy fasta	TOM1L1	chr17	54895852	54966956
TOM1L1_chr17_54895852_54966956	0/0	t0005	737	3	3	0	0	0	0	copy fasta	TOM1L1	chr17	54895852	54966956