JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TOM1L1_chr17_54895852_54966956	0/0	t0006	737	1	1	0	0	0	0	copy fasta	TOM1L1	chr17	54895852	54966956
TOM1L1_chr17_54895852_54966956	0/0	t0007	737	1	0	1	0	0	0	copy fasta	TOM1L1	chr17	54895852	54966956
TOM1L2_chr17_17838511_17977400	1/1	t0001	4212	82	19	19	30	4	8	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0002	4212	53	11	23	8	3	8	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0003	4212	16	1	4	11	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0004	4212	14	13	1	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0005	4212	13	0	0	13	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0006	4210	7	5	0	2	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0007	4210	6	6	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0008	4212	5	2	0	3	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0009	4212	5	4	1	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0010	4212	4	3	1	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0011	4212	2	2	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0012	4212	2	1	1	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0013	4212	2	2	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0014	4212	2	2	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0015	4212	2	0	2	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0016	4212	1	0	0	1	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0017	4212	1	0	0	1	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0018	4212	1	1	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0019	4212	1	0	0	1	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0020	4212	1	1	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0021	4212	1	1	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0022	4212	1	0	0	1	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0023	4212	1	1	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0024	4212	1	1	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0025	4212	1	0	1	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0026	4212	1	0	0	1	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0027	4210	1	1	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0028	4212	1	1	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0029	4210	1	1	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0030	4212	1	0	0	1	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0031	4212	1	1	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0032	4212	1	1	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0033	4212	1	0	1	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0034	4212	1	0	1	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0035	4212	1	0	0	0	1	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0036	4212	1	1	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0037	4212	1	1	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0038	4212	1	1	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0039	4212	1	0	0	1	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	t0040	4212	1	0	1	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1_chr22_35294894_35352973	1/1	t0001	800	348	79	70	153	10	34	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	t0002	800	7	5	2	0	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	t0003	800	1	0	0	1	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	t0004	800	1	0	0	1	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	t0005	800	1	0	0	1	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOMM20L_chr14_58390930_58413702	1/1	t0001	149	362	90	56	164	10	40	copy fasta	TOMM20L	chr14	58390930	58413702
TOMM20_chr1_235104341_235133837	0/0	t0001	2846	168	31	31	82	7	17	copy fasta	TOMM20	chr1	235104341	235133837
TOMM20_chr1_235104341_235133837	1/0	t0002	2846	146	10	27	86	6	16	copy fasta	TOMM20	chr1	235104341	235133837