JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TOMM22_chr22_38676957_38690421	0/0	t0033	1605	1	0	0	1	0	0	copy fasta	TOMM22	chr22	38676957	38690421
TOMM22_chr22_38676957_38690421	0/0	t0034	1603	1	1	0	0	0	0	copy fasta	TOMM22	chr22	38676957	38690421
TOMM22_chr22_38676957_38690421	0/1	t0035	1603	1	0	0	0	0	0	copy fasta	TOMM22	chr22	38676957	38690421
TOMM34_chr20_44937130_44965397	1/1	t0001	1044	351	66	68	154	15	46	copy fasta	TOMM34	chr20	44937130	44965397
TOMM34_chr20_44937130_44965397	0/0	t0002	1044	45	18	3	22	0	2	copy fasta	TOMM34	chr20	44937130	44965397
TOMM34_chr20_44937130_44965397	0/0	t0003	1044	8	7	1	0	0	0	copy fasta	TOMM34	chr20	44937130	44965397
TOMM34_chr20_44937130_44965397	0/0	t0004	1044	2	2	0	0	0	0	copy fasta	TOMM34	chr20	44937130	44965397
TOMM34_chr20_44937130_44965397	0/0	t0005	1044	2	0	0	0	2	0	copy fasta	TOMM34	chr20	44937130	44965397
TOMM34_chr20_44937130_44965397	0/0	t0006	1044	1	1	0	0	0	0	copy fasta	TOMM34	chr20	44937130	44965397
TOMM34_chr20_44937130_44965397	0/0	t0007	1044	1	1	0	0	0	0	copy fasta	TOMM34	chr20	44937130	44965397
TOMM34_chr20_44937130_44965397	0/0	t0008	1008	1	0	0	1	0	0	copy fasta	TOMM34	chr20	44937130	44965397
TOMM34_chr20_44937130_44965397	0/0	t0009	1044	1	0	0	1	0	0	copy fasta	TOMM34	chr20	44937130	44965397
TOMM34_chr20_44937130_44965397	0/0	t0010	1044	1	1	0	0	0	0	copy fasta	TOMM34	chr20	44937130	44965397
TOMM34_chr20_44937130_44965397	0/0	t0011	1044	1	0	0	0	1	0	copy fasta	TOMM34	chr20	44937130	44965397
TOMM40L_chr1_161221060_161235746	0/0	t0001	1864	181	7	30	122	5	17	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/1	t0002	1864	162	39	25	73	3	21	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	1/0	t0003	1864	66	16	20	9	8	12	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	t0004	1864	10	8	2	0	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	t0005	1861	6	5	1	0	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	t0006	1864	5	5	0	0	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	t0007	1864	3	3	0	0	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	t0008	1864	2	2	0	0	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	t0009	1864	2	0	0	2	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	t0010	1864	2	0	0	2	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	t0011	1864	1	1	0	0	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	t0012	1864	1	1	0	0	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	t0013	1864	1	0	0	1	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	t0014	1864	1	1	0	0	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	t0015	1864	1	0	0	1	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	t0016	1864	1	1	0	0	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	t0017	1864	1	1	0	0	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40_chr19_44886254_44908689	0/1	t0001	684	167	39	42	64	5	16	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	1/0	t0002	683	138	3	28	82	7	17	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	t0003	683	80	35	17	19	2	7	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	t0004	683	18	17	1	0	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	t0005	684	3	3	0	0	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	t0006	684	2	0	0	0	0	2	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	t0007	684	1	0	0	1	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	t0008	684	1	1	0	0	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	t0009	684	1	0	0	1	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	t0010	684	1	0	0	1	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM5_chr9_37583413_37597597	1/1	t0001	551	346	89	70	125	16	44	copy fasta	TOMM5	chr9	37583413	37597597
TOMM5_chr9_37583413_37597597	0/0	t0002	551	6	6	0	0	0	0	copy fasta	TOMM5	chr9	37583413	37597597
TOMM5_chr9_37583413_37597597	0/0	t0003	551	3	0	0	3	0	0	copy fasta	TOMM5	chr9	37583413	37597597
TOMM5_chr9_37583413_37597597	0/0	t0004	551	1	1	0	0	0	0	copy fasta	TOMM5	chr9	37583413	37597597
TOMM6_chr6_41782694_41794895	1/1	t0001	341	448	96	82	206	16	46	copy fasta	TOMM6	chr6	41782694	41794895
TOMM6_chr6_41782694_41794895	0/0	t0002	341	2	0	0	2	0	0	copy fasta	TOMM6	chr6	41782694	41794895
TOMM70_chr3_100358431_100406089	0/0	t0001	2273	101	23	10	63	0	5	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	1/1	t0002	2274	97	25	26	18	6	20	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	t0003	2274	64	0	11	40	3	10	copy fasta	TOMM70	chr3	100358431	100406089