JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TOMM70_chr3_100358431_100406089	0/0	t0004	2274	63	15	6	39	0	3	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	t0005	2277	39	6	15	11	1	6	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	t0006	2277	7	7	0	0	0	0	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	t0007	2274	7	0	0	7	0	0	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	t0008	2274	3	0	1	0	2	0	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	t0009	2269	3	0	0	3	0	0	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	t0010	2273	3	0	3	0	0	0	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	t0011	2277	3	3	0	0	0	0	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	t0012	2274	2	2	0	0	0	0	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	t0013	2273	1	0	0	1	0	0	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	t0014	2273	1	0	0	1	0	0	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	t0015	2274	1	0	0	0	0	1	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	t0016	2277	1	1	0	0	0	0	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	t0017	2277	1	0	0	0	0	1	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	t0018	2273	1	0	0	1	0	0	copy fasta	TOMM70	chr3	100358431	100406089
TOMM7_chr7_22807974_22827849	0/0	t0001	267	238	58	31	123	5	21	copy fasta	TOMM7	chr7	22807974	22827849
TOMM7_chr7_22807974_22827849	0/0	t0002	267	180	30	43	69	11	27	copy fasta	TOMM7	chr7	22807974	22827849
TOMM7_chr7_22807974_22827849	0/0	t0003	267	2	2	0	0	0	0	copy fasta	TOMM7	chr7	22807974	22827849
TOMT_chr11_72100924_72114596	1/1	t0001	700	310	70	63	132	6	37	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	t0002	700	72	16	10	40	2	4	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	t0003	700	7	7	0	0	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	t0004	700	5	0	0	5	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	t0005	700	2	0	0	2	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	t0006	700	1	1	0	0	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	t0007	700	1	0	1	0	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	t0008	700	1	0	0	1	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	t0009	700	1	0	0	0	0	1	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	t0010	700	1	1	0	0	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	t0011	700	1	1	0	0	0	0	copy fasta	TOMT	chr11	72100924	72114596
TONSL_chr8_144423775_144449440	0/0	t0001	396	150	22	36	66	7	19	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	t0002	395	146	38	28	53	5	22	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	t0003	396	58	6	9	43	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	t0004	396	11	11	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	t0005	395	10	5	0	5	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	t0006	396	10	10	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	t0007	396	6	0	0	6	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	t0008	396	5	2	0	3	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	t0009	395	2	0	1	0	0	1	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	t0010	396	2	2	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	t0011	395	2	2	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	t0012	395	1	0	0	1	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	t0013	396	1	0	0	1	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	t0014	395	1	0	0	1	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	t0015	395	1	0	0	1	0	0	copy fasta	TONSL	chr8	144423775	144449440
TOP1MT_chr8_143304324_143339880	1/1	t0001	137	428	93	82	189	16	46	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	t0002	137	1	0	0	1	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	t0003	137	1	1	0	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1_chr20_41023822_41129487	1/1	t0001	1437	364	81	59	180	11	31	copy fasta	TOP1	chr20	41023822	41129487
TOP1_chr20_41023822_41129487	0/0	t0002	1437	6	1	2	1	1	1	copy fasta	TOP1	chr20	41023822	41129487
TOP1_chr20_41023822_41129487	0/0	t0003	1436	3	0	0	0	2	1	copy fasta	TOP1	chr20	41023822	41129487