Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTBD19_chr1_44803523_44820585	0/0	t0124	2126	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0125	2122	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0126	2113	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0127	2114	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0128	2133	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0129	2147	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0130	2137	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0131	2135	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0132	2131	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0133	2108	1	1	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0134	2127	1	0	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0135	2108	1	1	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	t0136	2119	1	1	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD1_chr15_83011423_83072252	1/0	t0001	1746	190	42	28	94	6	19	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0002	1746	46	14	7	15	2	8	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0003	1745	21	11	6	0	1	3	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0004	1746	19	8	7	1	0	3	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0005	1746	16	12	3	0	1	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/1	t0006	1745	8	1	5	0	0	1	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0007	1748	4	1	0	0	0	3	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0008	1745	3	0	2	0	1	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0009	1746	3	0	0	3	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0010	1746	3	3	0	0	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0011	1746	3	1	0	1	0	1	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0012	1746	2	2	0	0	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0013	1746	2	0	1	0	1	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0014	1746	1	1	0	0	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0015	1745	1	0	0	0	0	1	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0016	1746	1	1	0	0	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0017	1746	1	0	1	0	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0018	1746	1	1	0	0	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0019	1746	1	0	0	1	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0020	1746	1	0	0	0	0	1	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	t0021	1748	1	0	0	1	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD2_chr19_1980448_2020714	0/0	t0001	1052	161	32	26	78	4	21	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	1/1	t0002	1052	149	38	31	55	9	14	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0003	1040	10	0	5	5	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0004	1052	6	4	1	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0005	1052	3	3	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0006	1052	3	0	0	0	1	2	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0007	1052	3	3	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0008	1052	3	2	1	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0009	1052	2	2	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0010	1052	2	0	2	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0011	1040	2	2	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0012	1052	2	0	0	2	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0013	1052	2	2	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0014	1052	1	1	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0015	1052	1	1	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0016	1052	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714