JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TOP1_chr20_41023822_41129487	0/0	t0004	1437	2	1	1	0	0	0	copy fasta	TOP1	chr20	41023822	41129487
TOP1_chr20_41023822_41129487	0/0	t0005	1437	1	0	0	0	0	1	copy fasta	TOP1	chr20	41023822	41129487
TOP1_chr20_41023822_41129487	0/0	t0006	1437	1	0	1	0	0	0	copy fasta	TOP1	chr20	41023822	41129487
TOP1_chr20_41023822_41129487	0/0	t0007	1437	1	1	0	0	0	0	copy fasta	TOP1	chr20	41023822	41129487
TOP1_chr20_41023822_41129487	0/0	t0008	1437	1	0	0	1	0	0	copy fasta	TOP1	chr20	41023822	41129487
TOP1_chr20_41023822_41129487	0/0	t0009	1437	1	0	1	0	0	0	copy fasta	TOP1	chr20	41023822	41129487
TOP2A_chr17_40383525_40422896	1/1	t0001	1100	224	72	43	75	8	24	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	t0002	1100	14	2	5	0	3	4	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	t0003	1100	12	0	0	12	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	t0004	1100	2	2	0	0	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	t0005	1100	2	0	1	0	1	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	t0006	1100	2	2	0	0	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	t0007	1100	1	0	0	1	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	t0008	1100	1	0	1	0	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2B_chr3_25592984_25669907	1/1	t0001	934	145	25	37	63	5	13	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	t0002	934	140	38	29	56	2	15	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	t0003	937	11	0	0	11	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	t0004	934	4	1	2	0	1	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	t0005	934	3	0	3	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	t0006	928	3	3	0	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	t0007	937	1	1	0	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	t0008	934	1	0	1	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	t0009	934	1	1	0	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	t0010	934	1	1	0	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP3A_chr17_18266428_18319994	1/1	t0001	3591	101	5	20	56	4	14	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0002	3591	85	14	15	48	2	6	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0003	3592	68	13	13	31	2	9	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0004	3593	54	15	16	14	4	5	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0005	3592	12	11	1	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0006	3592	8	8	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0007	3612	6	6	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0008	3592	5	1	2	2	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0009	3591	5	5	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0010	3611	4	1	3	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0011	3592	4	4	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0012	3592	3	0	0	3	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0013	3591	3	3	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0014	3591	2	1	1	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0015	3592	2	0	0	2	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0016	3611	1	1	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0017	3594	1	0	0	1	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0018	3592	1	0	0	1	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0019	3611	1	1	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0020	3593	1	0	1	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0021	3592	1	1	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0022	3592	1	1	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0023	3593	1	1	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0024	3591	1	1	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0025	3591	1	1	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0026	3591	1	1	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994