JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TOP3A_chr17_18266428_18319994	0/0	t0027	3591	1	1	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0028	3591	1	0	0	1	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0029	3592	1	0	0	1	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0030	3593	1	0	1	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0031	3591	1	0	0	0	0	1	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0032	3592	1	0	0	1	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0033	3591	1	0	0	1	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0034	3591	1	0	0	1	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0035	3591	1	0	0	0	0	1	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0036	3591	1	0	0	0	0	1	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0037	3591	1	0	1	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0038	3591	1	0	0	0	0	1	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0039	3591	1	0	0	1	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0040	3591	1	0	0	1	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	t0041	3591	1	0	0	1	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3B_chr22_21952025_21987787	0/0	t0001	246	192	76	24	69	6	17	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	t0002	246	109	3	27	56	5	18	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	t0003	246	26	3	9	9	1	4	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	t0004	246	18	14	4	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	t0005	246	1	0	0	0	0	1	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	t0006	246	1	1	0	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	t0007	246	1	1	0	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOPAZ1_chr3_44236886_44337098	0/1	t0001	256	196	76	48	32	13	26	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	1/0	t0002	256	62	18	8	30	1	4	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPBP1_chr3_133595238_133666941	1/1	t0001	1193	220	67	44	80	14	13	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	t0002	1194	87	9	12	52	2	12	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	t0003	1195	16	3	11	0	1	1	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	t0004	1193	8	8	0	0	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	t0005	1195	2	0	0	0	0	2	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	t0006	1193	1	0	0	1	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	t0007	1194	1	0	0	0	1	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	t0008	1193	1	1	0	0	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	t0009	1193	1	0	1	0	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	t0010	1193	1	1	0	0	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	t0011	1193	1	1	0	0	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	t0012	1193	1	0	0	1	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPORS_chr9_32535544_32557586	1/0	t0001	994	280	70	41	128	7	33	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	t0002	993	31	8	2	19	0	2	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	t0003	995	22	4	12	0	4	2	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/1	t0004	994	20	2	7	6	3	1	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	t0005	994	12	2	8	0	2	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	t0006	988	4	3	1	0	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	t0007	993	3	0	0	3	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	t0008	993	1	0	1	0	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	t0009	994	1	0	0	1	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	t0010	996	1	1	0	0	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	t0011	994	1	0	0	1	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOR1AIP1_chr1_179877285_179925076	1/0	t0001	2056	129	37	25	48	9	9	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/1	t0002	2056	86	3	24	47	2	9	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	t0003	2056	23	12	1	5	0	5	copy fasta	TOR1AIP1	chr1	179877285	179925076