JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TOR1AIP1_chr1_179877285_179925076	0/0	t0004	2056	17	15	0	0	1	1	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	t0005	2056	11	10	1	0	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	t0006	2055	6	6	0	0	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	t0007	2056	4	3	1	0	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	t0008	2056	3	0	0	3	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	t0009	2056	3	3	0	0	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	t0010	2056	2	2	0	0	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	t0011	2056	1	0	0	1	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	t0012	2056	1	1	0	0	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	t0013	2056	1	1	0	0	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	t0014	2056	1	1	0	0	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	t0015	2056	1	0	0	1	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	t0016	2056	1	0	0	1	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP2_chr1_179834976_179882803	0/1	t0001	6907	54	0	12	37	2	2	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0002	6903	30	1	7	21	1	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0003	6909	16	7	4	0	3	2	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0004	6927	10	1	1	6	0	2	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0005	6915	10	9	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0006	6897	9	0	5	0	3	1	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0007	6908	9	1	6	1	0	1	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0008	6907	8	3	0	5	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0009	6906	5	4	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0010	6930	5	0	0	4	1	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0011	6922	5	5	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0012	6924	5	4	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0013	6931	4	4	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0014	6907	4	4	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0015	6915	3	3	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0016	6902	3	0	0	3	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0017	6924	3	1	0	1	0	1	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0018	6925	3	3	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0019	6905	3	0	2	1	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0020	6907	3	3	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0021	6927	2	2	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0022	6918	2	2	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0023	6904	2	0	2	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0024	6908	2	1	0	0	1	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0025	6912	2	1	0	0	0	1	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0026	6933	2	0	0	2	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0027	6909	2	0	2	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0028	6929	2	2	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0029	6906	2	0	1	1	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0030	6906	2	0	0	2	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0031	6910	2	0	0	2	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0032	6907	2	0	0	2	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0033	6918	2	2	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0034	6897	1	0	0	0	1	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0035	6909	1	0	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0036	6929	1	0	0	1	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0037	6934	1	0	0	1	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803