JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
TOR1AIP2_chr1_179834976_179882803	0/0	t0038	6907	1	0	0	1	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0039	6922	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0040	6925	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0041	6920	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0042	6924	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0043	6911	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0044	6911	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0045	6908	1	0	0	1	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0046	6907	1	0	0	1	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0047	6927	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0048	6931	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0049	6905	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0050	6906	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0051	6907	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0052	6907	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0053	6908	1	0	1	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0054	6907	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0055	6903	1	0	1	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0056	6908	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0057	6908	1	0	0	0	1	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0058	6900	1	0	1	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0059	6930	1	0	0	1	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0060	6926	1	0	0	1	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0061	6909	1	0	0	1	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0062	6921	1	0	0	0	1	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0063	6921	1	0	0	1	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0064	6927	1	0	0	1	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0065	6924	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0066	6928	1	0	0	1	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0067	6931	1	0	0	1	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0068	6907	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0069	6928	1	0	0	1	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0070	6921	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0071	6929	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0072	6926	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0073	6929	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0074	6929	1	0	1	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0075	6923	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0076	6932	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0077	6922	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0078	6907	1	0	0	0	1	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0079	6911	1	0	1	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0080	6909	1	0	0	1	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0081	6907	1	0	0	1	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0082	6913	1	0	1	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0083	6907	1	0	1	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	1/0	t0084	6907	1	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0085	6907	1	0	1	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0086	6910	1	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0087	6908	1	0	0	0	1	copy fasta	TOR1AIP2	chr1	179834976	179882803