JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TOR1AIP2_chr1_179834976_179882803	0/0	t0088	6911	1	1	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0089	6927	1	0	0	1	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0090	6930	1	0	0	1	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0091	6910	1	1	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0092	6903	1	0	0	1	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0093	6921	1	1	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0094	6905	1	1	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	t0095	6921	1	1	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1A_chr9_129807942_129829136	1/1	t0001	1082	240	59	45	96	5	33	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	t0002	1080	47	2	10	29	4	2	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	t0003	1081	40	1	7	21	4	7	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	t0004	1082	16	9	4	0	0	3	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	t0005	1081	12	10	2	0	0	0	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	t0006	1081	6	0	0	5	0	1	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	t0007	1082	5	0	0	5	0	0	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	t0008	1083	4	2	1	1	0	0	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	t0009	1080	4	0	0	4	0	0	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	t0010	1082	2	0	1	0	1	0	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	t0011	1082	2	0	2	0	0	0	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	t0012	1082	2	2	0	0	0	0	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	t0013	1081	1	1	0	0	0	0	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	t0014	1082	1	0	0	1	0	0	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	t0015	1081	1	1	0	0	0	0	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	t0016	1081	1	1	0	0	0	0	copy fasta	TOR1A	chr9	129807942	129829136
TOR1B_chr9_129798184_129816281	0/1	t0001	1728	211	46	42	92	7	23	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0002	1728	42	3	9	24	3	3	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0003	1729	29	0	4	18	2	5	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	1/0	t0004	1728	12	9	0	2	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0005	1728	7	4	0	2	0	1	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0006	1729	7	1	1	2	0	3	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0007	1729	6	0	0	6	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0008	1730	5	0	1	0	0	4	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0009	1732	5	4	1	0	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0010	1728	4	0	4	0	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0011	1730	3	0	1	0	0	2	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0012	1730	3	0	1	0	2	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0013	1729	3	1	1	0	0	1	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0014	1728	3	0	0	3	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0015	1732	3	2	1	0	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0016	1731	3	3	0	0	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0017	1728	2	2	0	0	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0018	1728	2	2	0	0	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0019	1729	2	0	0	2	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0020	1727	2	0	0	2	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0021	1729	2	0	0	2	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0022	1727	2	2	0	0	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0023	1728	2	2	0	0	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0024	1729	1	0	0	0	1	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0025	1728	1	1	0	0	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0026	1728	1	1	0	0	0	0	copy fasta	TOR1B	chr9	129798184	129816281