JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TOR1B_chr9_129798184_129816281	0/0	t0027	1728	1	1	0	0	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0028	1728	1	0	0	1	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0029	1732	1	0	0	1	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0030	1731	1	0	0	0	1	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0031	1729	1	0	0	0	0	1	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0032	1728	1	0	0	1	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0033	1728	1	0	0	0	0	1	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0034	1728	1	0	0	1	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0035	1728	1	0	0	1	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0036	1728	1	1	0	0	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	t0037	1728	1	1	0	0	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR2A_chr9_127726524_127740294	1/1	t0001	535	329	72	66	129	15	45	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	t0002	535	10	9	1	0	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	t0003	534	8	0	0	8	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	t0004	535	6	5	0	0	1	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	t0005	535	6	6	0	0	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	t0006	535	1	0	0	1	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	t0007	535	1	0	1	0	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	t0008	535	1	0	0	0	0	1	copy fasta	TOR2A	chr9	127726524	127740294
TOR3A_chr1_179077070_179100996	0/0	t0001	838	135	29	23	65	4	14	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	1/0	t0002	838	113	5	24	66	6	11	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	t0003	838	112	30	16	54	3	9	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/1	t0004	842	27	10	5	8	1	2	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	t0005	816	10	9	1	0	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	t0006	850	7	6	1	0	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	t0007	842	5	4	1	0	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	t0008	838	3	3	0	0	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	t0009	838	1	0	0	1	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	t0010	838	1	0	1	0	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	t0011	838	1	0	1	0	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	t0012	838	1	1	0	0	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	t0013	838	1	0	1	0	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	t0014	838	1	1	0	0	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR4A_chr9_137272726_137287641	0/1	t0001	2900	199	48	46	69	8	27	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0002	2900	69	1	9	50	3	6	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	1/0	t0003	2900	33	16	11	0	4	1	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0004	2900	24	0	0	24	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0005	2900	18	2	0	12	1	3	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0006	2900	12	1	5	4	0	2	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0007	2900	8	8	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0008	2900	5	0	0	5	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0009	2900	5	0	0	5	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0010	2900	4	4	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0011	2900	4	4	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0012	2900	3	3	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0013	2889	3	1	0	0	2	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0014	2900	2	0	0	0	0	2	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0015	2900	2	0	0	2	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0016	2900	2	2	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0017	2900	1	0	1	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641