JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TOR4A_chr9_137272726_137287641	0/0	t0018	2900	1	1	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0019	2900	1	1	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0020	2900	1	0	0	0	0	1	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0021	2900	1	0	1	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0022	2900	1	0	1	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0023	2900	1	1	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0024	2900	1	0	0	1	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0025	2900	1	1	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0026	2900	1	0	0	1	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0027	2900	1	1	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0028	2900	1	0	1	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0029	2900	1	0	1	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0030	2900	1	0	0	1	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	t0031	2900	1	1	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOX2_chr20_43909852_44074616	1/0	t0001	971	230	53	52	91	8	25	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/1	t0002	971	39	29	5	2	0	2	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	t0003	971	7	4	1	1	0	1	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	t0004	968	3	0	0	3	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	t0005	971	2	0	0	2	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	t0006	971	2	0	0	2	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	t0007	971	1	1	0	0	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	t0008	971	1	0	0	1	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	t0009	971	1	1	0	0	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	t0010	968	1	0	0	1	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	t0011	968	1	0	0	1	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX3_chr16_52431417_52552143	0/0	t0001	3227	96	4	16	60	4	12	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0002	3232	50	23	9	11	4	3	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/1	t0003	3228	31	9	4	12	2	3	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0004	3227	19	1	6	11	0	1	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0005	3232	15	0	0	11	0	4	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0006	3226	13	1	1	6	1	4	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0007	3233	11	10	0	0	0	1	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0008	3232	6	0	0	3	0	3	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0009	3228	6	1	0	1	1	3	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0010	3231	6	5	0	0	0	1	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0011	3232	3	0	0	3	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0012	3231	3	2	0	1	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0013	3232	3	1	2	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0014	3232	3	2	1	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	1/0	t0015	3229	3	0	1	1	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0016	3227	3	3	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0017	3226	2	0	1	1	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0018	3227	2	0	2	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0019	3232	2	0	0	0	1	1	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0020	3229	2	0	0	2	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0021	3232	2	2	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0022	3233	2	2	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0023	3231	2	0	0	1	0	1	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0024	3232	2	2	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0025	3232	2	0	0	2	0	0	copy fasta	TOX3	chr16	52431417	52552143