JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TOX3_chr16_52431417_52552143	0/0	t0026	3233	2	2	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0027	3234	2	2	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0028	3227	2	0	0	2	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0029	3232	2	2	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0030	3232	2	2	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0031	3227	2	2	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0032	3233	1	1	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0033	3231	1	0	0	0	1	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0034	3232	1	1	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0035	3233	1	0	0	0	0	1	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0036	3231	1	1	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0037	3226	1	0	0	1	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0038	3227	1	0	0	1	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0039	3233	1	1	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0040	3227	1	0	1	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0041	3232	1	1	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0042	3232	1	0	1	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0043	3233	1	1	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0044	3234	1	1	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0045	3231	1	1	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0046	3227	1	0	0	1	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0047	3227	1	0	0	1	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0048	3227	1	0	0	1	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0049	3227	1	0	1	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0050	3229	1	1	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0051	3211	1	0	0	1	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	t0052	3228	1	1	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX4_chr14_21472195_21504170	0/0	t0001	2635	161	27	27	85	6	16	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/1	t0002	2644	47	1	6	29	5	5	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0003	2635	32	11	10	7	2	2	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	1/0	t0004	2649	28	2	4	18	0	3	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0005	2635	25	7	0	18	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0006	2645	17	0	1	11	0	5	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0007	2641	13	13	0	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0008	2636	13	9	1	0	0	3	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0009	2649	10	0	10	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0010	2642	8	8	0	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0011	2635	5	0	0	5	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0012	2643	4	1	0	2	0	1	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0013	2650	3	0	1	0	0	2	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0014	2643	3	1	2	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0015	2641	2	2	0	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0016	2645	2	2	0	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0017	2635	2	0	0	2	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0018	2636	2	0	0	2	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0019	2635	1	0	0	1	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0020	2649	1	0	1	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0021	2649	1	1	0	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0022	2649	1	0	0	0	1	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0023	2649	1	0	1	0	0	0	copy fasta	TOX4	chr14	21472195	21504170