JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TOX4_chr14_21472195_21504170	0/0	t0024	2644	1	0	0	0	0	1	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0025	2644	1	1	0	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0026	2649	1	1	0	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0027	2635	1	0	0	1	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0028	2635	1	0	0	1	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0029	2635	1	0	0	0	0	1	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0030	2635	1	1	0	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0031	2649	1	0	1	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0032	2636	1	0	1	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0033	2645	1	0	1	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0034	2649	1	0	1	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0035	2649	1	0	0	0	0	1	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0036	2641	1	1	0	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0037	2642	1	1	0	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0038	2644	1	0	0	1	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0039	2649	1	1	0	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0040	2635	1	0	0	1	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	t0041	2637	1	1	0	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX_chr8_58800412_59124147	0/0	t0001	2496	87	25	14	33	1	14	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	0/1	t0002	2496	65	19	7	33	0	5	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	1/0	t0003	2496	55	26	17	5	1	5	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	0/0	t0004	2496	7	1	0	5	0	1	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	0/0	t0005	2496	2	2	0	0	0	0	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	0/0	t0006	2496	2	0	2	0	0	0	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	0/0	t0007	2496	1	0	0	0	0	1	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	0/0	t0008	2496	1	1	0	0	0	0	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	0/0	t0009	2496	1	1	0	0	0	0	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	0/0	t0010	2496	1	1	0	0	0	0	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	0/0	t0011	2496	1	0	0	1	0	0	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	0/0	t0012	2496	1	0	0	1	0	0	copy fasta	TOX	chr8	58800412	59124147
TP53AIP1_chr11_128930370_128947871	1/1	t0001	376	265	36	60	128	9	30	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0002	384	70	22	8	35	3	2	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0003	376	44	13	4	23	1	3	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0004	376	26	0	3	22	0	1	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0005	378	7	7	0	0	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0006	378	7	5	0	0	0	2	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0007	384	7	0	0	7	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0008	376	7	1	3	0	1	2	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0009	384	5	1	3	1	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0010	376	4	2	1	0	0	1	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0011	384	4	1	2	0	1	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0012	376	3	3	0	0	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0013	376	3	1	1	0	0	1	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0014	376	3	0	1	1	0	1	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0015	384	3	3	0	0	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0016	384	2	0	0	2	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0017	384	1	1	0	0	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0018	378	1	1	0	0	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0019	384	1	0	0	0	0	1	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0020	376	1	0	0	0	1	0	copy fasta	TP53AIP1	chr11	128930370	128947871