JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TP53AIP1_chr11_128930370_128947871	0/0	t0021	376	1	1	0	0	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	t0022	376	1	0	0	1	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53BP1_chr15_43398061_43498156	1/0	t0001	4436	86	4	15	51	5	10	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0002	4435	64	15	5	36	0	8	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0003	4433	31	11	7	0	4	9	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0004	4430	17	0	0	17	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0005	4434	15	10	2	1	0	2	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0006	4434	14	0	1	13	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0007	4435	11	10	1	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0008	4437	10	0	3	5	0	2	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0009	4435	8	4	1	3	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0010	4435	6	5	1	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0011	4435	4	3	1	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0012	4436	4	3	1	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0013	4437	3	0	0	2	1	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0014	4436	3	2	1	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0015	4437	2	0	0	2	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0016	4434	2	2	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0017	4437	2	0	0	2	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/1	t0018	4436	2	0	0	0	1	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0019	4436	2	0	0	2	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0020	4437	2	2	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0021	4435	1	0	0	0	0	1	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0022	4435	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0023	4437	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0024	4434	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0025	4435	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0026	4435	1	0	0	1	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0027	4437	1	0	0	1	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0028	4437	1	0	0	1	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0029	4439	1	0	0	1	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0030	4435	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0031	4435	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0032	4437	1	0	1	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0033	4436	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	t0034	4438	1	0	0	0	1	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP2_chr1_223774893_223850947	1/1	t0001	1228	201	23	41	105	6	24	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	t0002	1228	163	55	27	71	2	8	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	t0003	1228	7	6	1	0	0	0	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	t0004	1228	4	0	0	4	0	0	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	t0005	1228	2	0	0	2	0	0	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	t0006	1228	1	1	0	0	0	0	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	t0007	1228	1	0	1	0	0	0	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	t0008	1228	1	1	0	0	0	0	copy fasta	TP53BP2	chr1	223774893	223850947
TP53I11_chr11_44927348_44955883	0/1	t0001	2789	136	5	30	82	5	13	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0002	2770	42	2	0	39	0	1	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0003	2789	42	8	16	4	8	6	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0004	2789	38	0	6	30	0	2	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0005	2794	18	0	1	8	0	9	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0006	2794	15	13	2	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883