Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTBD2_chr19_1980448_2020714	0/0	t0017	1052	1	0	0	0	0	1	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0018	1052	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0019	1052	1	0	0	0	0	1	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0020	1052	1	0	0	0	1	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0021	1052	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0022	1052	1	1	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0023	1052	1	1	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0024	1052	1	1	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0025	1052	1	0	1	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0026	1052	1	1	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0027	1040	1	0	1	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0028	1052	1	0	0	0	0	1	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	t0029	1052	1	0	0	0	1	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD3_chr20_11912893_11931595	0/0	t0001	3313	149	16	32	85	4	12	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0002	3313	129	23	31	56	8	11	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	1/1	t0003	3313	71	25	14	25	0	5	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0004	3313	47	0	1	37	0	9	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0005	3313	18	17	1	0	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0006	3313	6	6	0	0	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0007	3313	4	0	0	4	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0008	3313	3	0	0	3	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0009	3313	2	2	0	0	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0010	3313	1	0	0	0	0	1	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0011	3313	1	0	1	0	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0012	3313	1	0	1	0	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0013	3313	1	1	0	0	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0014	3313	1	0	1	0	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0015	3313	1	1	0	0	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0016	3313	1	1	0	0	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0017	3313	1	0	0	1	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0018	3313	1	0	0	1	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0019	3313	1	1	0	0	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0020	3313	1	1	0	0	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0021	3313	1	0	0	0	0	1	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0022	3313	1	0	0	1	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0023	3313	1	0	0	1	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	t0024	3313	1	0	0	0	0	1	copy fasta	BTBD3	chr20	11912893	11931595
BTBD6_chr14_105243533_105256093	0/0	t0001	597	111	9	24	67	2	9	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	1/1	t0002	601	72	38	12	8	6	6	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0003	597	39	3	8	16	6	6	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0004	605	20	10	5	5	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0005	601	5	0	3	0	0	2	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0006	621	4	4	0	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0007	597	3	2	1	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0008	597	3	3	0	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0009	601	3	2	1	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0010	605	2	1	0	0	0	1	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0011	605	2	2	0	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0012	609	2	2	0	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0013	609	1	0	1	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093