JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TP53I11_chr11_44927348_44955883	0/0	t0007	2794	12	11	1	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0008	2789	11	0	0	11	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0009	2775	11	0	5	3	0	3	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0010	2775	7	7	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0011	2794	7	4	2	0	1	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0012	2794	5	0	3	0	2	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0013	2789	5	4	1	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0014	2755	5	1	3	0	0	1	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0015	2789	5	5	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0016	2794	4	3	1	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0017	2794	3	3	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0018	2775	3	0	0	0	0	3	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0019	2789	3	0	0	3	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0020	2789	3	3	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0021	2789	3	0	2	0	0	1	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0022	2799	2	2	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0023	2799	2	2	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0024	2794	2	2	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0025	2794	2	2	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0026	2789	2	0	1	0	0	1	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0027	2794	1	0	0	1	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0028	2804	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0029	2794	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0030	2794	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0031	2799	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0032	2799	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0033	2794	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0034	2794	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0035	2794	1	0	0	0	0	1	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0036	2794	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0037	2794	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	1/0	t0038	2775	1	0	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0039	2794	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0040	2794	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0041	2794	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0042	2841	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0043	2794	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0044	2794	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0045	2794	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0046	2784	1	0	0	1	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0047	2789	1	0	0	1	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0048	2789	1	0	0	0	0	1	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0049	2789	1	0	1	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0050	2789	1	0	0	1	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0051	2789	1	0	0	0	0	1	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0052	2770	1	0	0	1	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0053	2789	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0054	2770	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0055	2789	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0056	2789	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883