JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TP53I11_chr11_44927348_44955883	0/0	t0057	2794	1	0	0	0	0	1	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0058	2794	1	0	0	1	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0059	2775	1	0	1	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	t0060	2794	1	1	0	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I13_chr17_29563701_29578157	1/1	t0001	292	398	89	76	163	18	50	copy fasta	TP53I13	chr17	29563701	29578157
TP53I13_chr17_29563701_29578157	0/0	t0002	292	8	5	3	0	0	0	copy fasta	TP53I13	chr17	29563701	29578157
TP53I13_chr17_29563701_29578157	0/0	t0003	292	1	0	0	1	0	0	copy fasta	TP53I13	chr17	29563701	29578157
TP53I13_chr17_29563701_29578157	0/0	t0004	292	1	0	1	0	0	0	copy fasta	TP53I13	chr17	29563701	29578157
TP53I3_chr2_24072433_24089834	1/0	t0001	655	224	58	45	96	7	17	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	t0002	660	42	6	8	14	3	11	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/1	t0003	665	35	10	6	8	3	7	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	t0004	630	22	3	4	11	2	2	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	t0005	655	10	1	1	6	1	1	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	t0006	655	3	3	0	0	0	0	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	t0007	660	3	3	0	0	0	0	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	t0008	630	3	0	1	0	0	2	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	t0009	655	2	0	0	0	2	0	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	t0010	665	2	1	1	0	0	0	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	t0011	655	1	0	0	1	0	0	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	t0012	655	1	1	0	0	0	0	copy fasta	TP53I3	chr2	24072433	24089834
TP53INP1_chr8_94920972_94954378	0/0	t0001	4885	162	24	34	77	5	22	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0002	4885	48	1	14	28	0	5	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0003	4885	39	31	6	0	0	2	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0004	4885	30	11	1	13	2	3	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	1/0	t0005	4883	26	1	0	15	4	5	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0006	4885	7	6	1	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0007	4885	5	0	0	5	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0008	4885	5	5	0	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0009	4883	4	3	1	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0010	4883	3	3	0	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/1	t0011	4885	3	0	0	0	1	1	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0012	4885	2	2	0	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0013	4883	2	0	0	2	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0014	4886	2	2	0	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0015	4885	2	0	0	2	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0016	4884	2	0	2	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0017	4884	2	1	0	1	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0018	4886	1	1	0	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0019	4885	1	0	1	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0020	4884	1	1	0	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0021	4885	1	1	0	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0022	4885	1	0	0	1	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0023	4885	1	0	0	1	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0024	4885	1	0	1	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0025	4886	1	0	0	0	0	1	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0026	4885	1	1	0	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0027	4885	1	0	0	0	0	1	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0028	4885	1	0	0	1	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0029	4885	1	0	0	1	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0030	4885	1	0	0	1	0	0	copy fasta	TP53INP1	chr8	94920972	94954378