JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TP53TG5_chr20_45367557_45383325	0/0	t0011	1440	1	0	0	1	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53_chr17_7663421_7692490	0/1	t0001	1330	171	62	36	42	12	18	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	1/0	t0002	1331	105	12	17	52	2	21	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0003	1330	27	1	10	16	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0004	1331	20	3	5	7	3	2	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0005	1332	7	1	1	4	0	1	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0006	1332	5	0	2	3	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0007	1331	3	0	0	3	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0008	1330	3	0	0	3	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0009	1331	3	0	0	3	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0010	1330	2	0	2	0	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0011	1330	2	0	1	0	0	1	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0012	1330	2	2	0	0	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0013	1328	2	2	0	0	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0014	1330	1	0	1	0	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0015	1330	1	0	0	0	0	1	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0016	1332	1	0	0	1	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0017	1331	1	1	0	0	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0018	1330	1	0	1	0	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0019	1330	1	1	0	0	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0020	1330	1	1	0	0	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0021	1331	1	0	0	0	1	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0022	1329	1	1	0	0	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	t0023	1330	1	1	0	0	0	0	copy fasta	TP53	chr17	7663421	7692490
TP63_chr3_189626389_189902276	0/1	t0001	2902	94	10	17	57	2	7	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	1/0	t0002	2902	69	19	14	22	4	9	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0003	2902	31	16	4	7	0	4	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0004	2902	30	10	3	9	2	6	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0005	2902	12	0	2	8	0	2	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0006	2902	7	7	0	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0007	2902	5	4	0	1	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0008	2901	5	0	4	0	0	1	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0009	2902	4	0	4	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0010	2902	4	4	0	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0011	2902	4	0	2	0	0	2	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0012	2903	3	1	2	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0013	2902	3	1	0	1	0	1	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0014	2902	3	0	0	3	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0015	2901	3	0	2	0	0	1	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0016	2902	2	0	0	1	0	1	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0017	2902	2	2	0	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0018	2902	2	1	1	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0019	2902	2	2	0	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0020	2901	2	0	1	1	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0021	2902	2	2	0	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0022	2903	2	2	0	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0023	2901	2	1	1	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0024	2902	1	1	0	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0025	2902	1	1	0	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0026	2901	1	1	0	0	0	0	copy fasta	TP63	chr3	189626389	189902276