JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TP63_chr3_189626389_189902276	0/0	t0027	2901	1	1	0	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0028	2902	1	0	0	0	0	1	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0029	2901	1	0	1	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0030	2902	1	0	1	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0031	2902	1	1	0	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0032	2902	1	1	0	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0033	2902	1	0	0	0	1	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0034	2902	1	1	0	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0035	2902	1	0	1	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0036	2902	1	0	0	1	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0037	2902	1	0	0	0	1	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0038	2902	1	0	0	1	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0039	2902	1	0	0	0	0	1	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0040	2902	1	0	0	1	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0041	2902	1	1	0	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	t0042	2902	1	0	0	1	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189784659_189902276	0/0	t0001	2921	112	15	22	66	3	6	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	1/1	t0002	2917	93	15	10	51	4	11	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0003	2917	52	20	7	14	2	9	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0004	2921	19	7	2	7	1	2	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0005	2921	14	0	0	13	0	1	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0006	2917	10	1	2	4	0	3	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0007	2917	8	0	7	0	0	1	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0008	2919	7	0	5	0	0	2	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0009	2921	6	0	0	5	0	1	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0010	2921	6	6	0	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0011	2921	5	5	0	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0012	2918	5	3	2	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0013	2921	3	2	1	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0014	2920	3	0	2	0	0	1	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0015	2920	3	0	3	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0016	2919	3	1	1	0	0	1	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0017	2917	3	2	0	1	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0018	2917	3	3	0	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0019	2916	3	1	2	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0020	2916	3	0	2	1	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0021	2917	3	0	3	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0022	2921	2	2	0	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0023	2921	2	2	0	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0024	2918	2	0	1	0	0	1	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0025	2917	2	2	0	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0026	2917	2	2	0	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0027	2917	2	0	0	2	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0028	2921	1	1	0	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0029	2921	1	1	0	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0030	2921	1	1	0	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0031	2921	1	1	0	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0032	2921	1	0	0	0	0	1	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0033	2921	1	1	0	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0034	2921	1	1	0	0	0	0	copy fasta	TP63	chr3	189784659	189902276