JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TP63_chr3_189784659_189902276	0/0	t0035	2921	1	0	0	1	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0036	2921	1	0	0	1	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0037	2921	1	0	0	1	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0038	2917	1	1	0	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0039	2917	1	0	0	1	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0040	2916	1	1	0	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0041	2916	1	1	0	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0042	2917	1	0	0	0	0	1	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0043	2917	1	0	1	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0044	2917	1	0	0	0	1	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0045	2917	1	0	0	1	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0046	2917	1	0	0	1	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0047	2917	1	0	0	0	0	1	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0048	2917	1	0	1	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	t0049	2917	1	0	0	0	1	0	copy fasta	TP63	chr3	189784659	189902276
TP73_chr1_3647516_3741201	1/0	t0001	3282	96	30	13	41	3	8	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0002	3283	80	8	26	28	9	9	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0003	3283	29	3	4	17	0	5	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0004	3283	19	1	6	5	3	4	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0005	3282	16	0	6	5	0	5	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0006	3281	12	0	0	11	0	1	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/1	t0007	3284	8	0	1	2	1	3	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0008	3283	7	4	1	1	1	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0009	3282	7	5	1	0	0	1	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0010	3282	5	5	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0011	3282	5	5	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0012	3282	4	4	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0013	3282	4	0	0	3	1	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0014	3282	4	4	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0015	3281	3	1	0	2	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0016	3283	3	0	0	3	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0017	3282	3	0	0	3	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0018	3282	3	3	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0019	3282	3	3	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0020	3281	2	0	0	2	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0021	3283	2	0	2	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0022	3282	2	2	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0023	3282	2	1	1	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0024	3282	2	2	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0025	3282	2	0	0	1	0	1	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0026	3281	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0027	3282	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0028	3282	1	1	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0029	3282	1	0	1	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0030	3283	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0031	3283	1	1	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0032	3283	1	0	1	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0033	3284	1	0	0	0	0	1	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0034	3281	1	1	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0035	3281	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201