JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TP73_chr1_3647516_3741201	0/0	t0036	3282	1	1	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0037	3282	1	1	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0038	3283	1	1	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0039	3282	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0040	3283	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0041	3283	1	1	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0042	3283	1	1	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0043	3282	1	0	1	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0044	3282	1	1	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0045	3282	1	0	0	0	0	1	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0046	3282	1	0	1	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0047	3282	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0048	3282	1	0	1	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0049	3282	1	1	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0050	3283	1	0	1	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0051	3283	1	0	0	0	0	1	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0052	3283	1	0	0	0	0	1	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0053	3283	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0054	3283	1	0	0	0	0	1	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0055	3323	1	0	1	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0056	3284	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0057	3282	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0058	3281	1	1	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0059	3281	1	0	1	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	t0060	3282	1	0	1	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TPBGL_chr11_75235774_75248704	1/1	t0001	1783	266	30	47	147	13	27	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0002	1782	36	18	9	1	4	4	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0003	1784	30	9	3	11	0	7	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0004	1783	16	15	1	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0005	1783	3	0	3	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0006	1783	3	3	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0007	1782	2	2	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0008	1782	2	0	0	0	1	1	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0009	1783	2	2	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0010	1783	2	0	0	2	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0011	1783	2	0	0	2	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0012	1783	1	0	0	1	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0013	1782	1	1	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0014	1783	1	1	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0015	1783	1	1	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0016	1783	1	1	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0017	1784	1	1	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0018	1784	1	1	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0019	1784	1	0	0	0	0	1	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0020	1784	1	1	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0021	1784	1	0	1	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0022	1784	1	1	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0023	1784	1	0	0	1	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0024	1782	1	1	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	t0025	1783	1	0	0	1	0	0	copy fasta	TPBGL	chr11	75235774	75248704