JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPBG_chr6_82358817_82372420	1/0	t0001	1628	210	42	31	117	3	16	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/1	t0002	1628	168	34	28	67	9	29	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	t0003	1628	8	0	1	4	0	3	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	t0004	1629	8	8	0	0	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	t0005	1628	7	7	0	0	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	t0006	1635	6	0	0	6	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	t0007	1622	5	0	3	0	2	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	t0008	1627	5	0	0	5	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	t0009	1628	3	0	3	0	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	t0010	1627	2	0	1	1	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	t0011	1628	2	2	0	0	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	t0012	1627	2	2	0	0	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	t0013	1628	1	0	0	1	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	t0014	1628	1	0	0	1	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	t0015	1628	1	1	0	0	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	t0016	1629	1	1	0	0	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	t0017	1628	1	0	1	0	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	t0018	1628	1	1	0	0	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPCN1_chr12_113216464_113303585	1/0	t0001	2798	101	34	13	43	2	8	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0002	2798	57	3	1	48	0	5	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0003	2798	31	25	1	1	2	2	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/1	t0004	2798	22	2	4	8	4	3	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0005	2798	7	1	0	6	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0006	2798	5	5	0	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0007	2798	4	0	1	0	1	2	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0008	2798	3	1	1	0	1	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0009	2798	3	3	0	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0010	2798	2	2	0	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0011	2798	2	2	0	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0012	2798	1	1	0	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0013	2798	1	0	0	1	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0014	2798	1	0	1	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0015	2842	1	0	0	1	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0016	2798	1	0	0	1	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0017	2798	1	1	0	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0018	2798	1	1	0	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0019	2798	1	1	0	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0020	2798	1	1	0	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0021	2798	1	1	0	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0022	2798	1	0	0	1	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0023	2798	1	0	0	1	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	t0024	2798	1	0	0	1	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN2_chr11_69043932_69095597	0/1	t0001	2711	84	20	16	26	4	17	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0002	2670	70	4	13	40	8	5	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0003	2711	45	0	9	36	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	1/0	t0004	2711	39	9	8	20	0	1	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0005	2711	26	3	6	17	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0006	2711	22	1	9	1	3	8	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0007	2670	18	1	8	3	3	3	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0008	2670	12	0	2	10	0	0	copy fasta	TPCN2	chr11	69043932	69095597