JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPCN2_chr11_69043932_69095597	0/0	t0009	2704	11	10	1	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0010	2711	8	0	0	8	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0011	2711	7	7	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0012	2704	7	7	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0013	2711	6	6	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0014	2711	6	6	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0015	2705	5	5	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0016	2711	4	3	1	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0017	2711	3	3	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0018	2670	3	0	0	3	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0019	2704	2	2	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0020	2704	2	2	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0021	2711	2	0	2	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0022	2711	2	2	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0023	2711	1	0	0	1	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0024	2711	1	0	0	0	0	1	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0025	2711	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0026	2711	1	0	0	1	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0027	2711	1	0	0	1	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0028	2711	1	0	0	1	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0029	2711	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0030	2711	1	0	0	0	0	1	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0031	2711	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0032	2670	1	0	1	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0033	2704	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0034	2711	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0035	2711	1	0	0	1	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0036	2704	1	0	1	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0037	2704	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0038	2670	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0039	2670	1	0	0	1	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0040	2711	1	0	0	0	0	1	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0041	2711	1	0	0	0	0	1	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	t0042	2711	1	0	1	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPD52L1_chr6_125148773_125269407	0/1	t0001	1625	205	49	33	100	5	17	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L1_chr6_125148773_125269407	0/0	t0002	1625	93	28	21	33	2	9	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L1_chr6_125148773_125269407	0/0	t0003	1625	6	6	0	0	0	0	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L1_chr6_125148773_125269407	0/0	t0004	1625	5	0	0	5	0	0	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L1_chr6_125148773_125269407	0/0	t0005	1625	3	3	0	0	0	0	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L1_chr6_125148773_125269407	1/0	t0006	1625	3	0	1	1	0	0	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L1_chr6_125148773_125269407	0/0	t0007	1625	1	0	1	0	0	0	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L1_chr6_125148773_125269407	0/0	t0008	1625	1	1	0	0	0	0	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L1_chr6_125148773_125269407	0/0	t0009	1625	1	0	0	0	1	0	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L1_chr6_125148773_125269407	0/0	t0010	1625	1	1	0	0	0	0	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L1_chr6_125148773_125269407	0/0	t0011	1625	1	0	0	1	0	0	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L2_chr20_63860270_63896538	0/1	t0001	1690	172	39	30	78	4	20	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	1/0	t0002	1690	56	14	29	3	6	3	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0003	1690	49	0	5	38	0	6	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0004	1690	39	19	2	18	0	0	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0005	1690	12	0	1	11	0	0	copy fasta	TPD52L2	chr20	63860270	63896538