Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTBD6_chr14_105243533_105256093	0/0	t0014	585	1	1	0	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0015	613	1	0	0	0	0	1	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0016	576	1	1	0	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0017	597	1	0	0	1	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0018	601	1	0	1	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0019	617	1	0	0	0	0	1	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0020	641	1	1	0	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0021	597	1	1	0	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0022	617	1	0	0	1	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0023	623	1	0	0	1	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	t0024	627	1	0	0	1	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD7_chr14_93232550_93338036	0/0	t0001	5047	99	5	25	52	8	9	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0002	5043	81	5	9	57	1	9	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0003	5044	33	6	2	24	1	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0004	5044	18	12	3	0	2	1	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0005	5045	13	11	2	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0006	5044	12	0	9	0	1	2	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0007	5041	9	5	2	0	0	2	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0008	5045	8	0	0	5	0	3	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0009	5047	5	0	0	5	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0010	5045	5	5	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0011	5044	5	5	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0012	5046	4	0	4	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0013	5044	4	0	4	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0014	5044	4	4	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0015	5046	4	4	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0016	5047	3	0	3	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0017	5043	3	3	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0018	5045	3	3	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0019	5045	3	2	1	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0020	5047	2	0	0	2	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0021	5047	2	0	0	2	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0022	5046	2	0	0	0	0	2	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/1	t0023	5045	2	0	0	0	1	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0024	5044	2	1	1	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0025	5044	2	1	0	1	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0026	5044	2	2	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0027	5045	2	2	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0028	5044	2	2	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0029	5046	2	0	0	2	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0030	5041	2	0	1	0	0	1	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0031	5045	2	2	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0032	5043	2	2	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0033	5043	2	0	0	2	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0034	5048	1	0	0	1	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0035	5048	1	0	0	1	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0036	5048	1	0	0	1	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0037	5047	1	0	1	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0038	5047	1	0	1	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0039	5047	1	0	1	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036