JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPD52L2_chr20_63860270_63896538	0/0	t0006	1690	9	1	1	0	3	4	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0007	1690	6	6	0	0	0	0	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0008	1690	4	0	0	4	0	0	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0009	1690	4	0	0	0	0	4	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0010	1690	2	0	1	0	1	0	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0011	1690	2	0	1	0	0	1	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0012	1690	2	0	0	0	0	2	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0013	1690	1	1	0	0	0	0	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0014	1690	1	0	0	0	0	1	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0015	1690	1	0	0	1	0	0	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0016	1690	1	0	0	1	0	0	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0017	1690	1	0	1	0	0	0	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0018	1690	1	1	0	0	0	0	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0019	1690	1	0	0	1	0	0	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0020	1690	1	0	0	1	0	0	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0021	1690	1	0	0	0	0	1	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0022	1690	1	0	1	0	0	0	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	t0023	1690	1	1	0	0	0	0	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L3_chr9_6323375_6336891	0/0	t0001	1094	230	39	39	116	7	29	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	t0002	1094	68	1	15	49	0	3	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	t0003	1094	49	21	15	0	5	8	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	1/1	t0004	1094	12	4	4	0	0	2	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	t0005	1094	8	6	2	0	0	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	t0006	1094	7	7	0	0	0	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	t0007	1094	6	6	0	0	0	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	t0008	1094	5	5	0	0	0	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	t0009	1094	3	0	2	0	1	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	t0010	1094	2	0	2	0	0	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	t0011	1094	1	1	0	0	0	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	t0012	1063	1	1	0	0	0	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	t0013	1094	1	0	1	0	0	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	t0014	1094	1	0	0	0	1	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	t0015	1094	1	1	0	0	0	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	t0016	1094	1	0	0	1	0	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52_chr8_80029745_80176564	1/1	t0001	3493	151	36	38	46	8	21	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0002	3489	15	14	1	0	0	0	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0003	3493	14	11	1	1	0	1	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0004	3493	13	0	0	11	0	2	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0005	3493	11	10	1	0	0	0	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0006	3492	5	4	1	0	0	0	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0007	3493	3	1	2	0	0	0	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0008	3493	2	0	0	2	0	0	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0009	3493	2	1	1	0	0	0	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0010	3493	2	2	0	0	0	0	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0011	3489	1	1	0	0	0	0	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0012	3492	1	0	0	0	0	1	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0013	3493	1	0	1	0	0	0	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0014	3493	1	1	0	0	0	0	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0015	3493	1	0	0	1	0	0	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0016	3493	1	1	0	0	0	0	copy fasta	TPD52	chr8	80029745	80176564