JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPD52_chr8_80029745_80176564	0/0	t0017	3493	1	0	0	1	0	0	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0018	3493	1	1	0	0	0	0	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0019	3493	1	1	0	0	0	0	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	t0020	3493	1	0	0	0	0	1	copy fasta	TPD52	chr8	80029745	80176564
TPGS1_chr19_502497_524654	1/1	t0001	242	288	75	62	107	16	26	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	t0002	242	15	0	2	6	0	7	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	t0003	243	14	3	3	7	0	1	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	t0004	242	11	11	0	0	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	t0005	242	3	3	0	0	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	t0006	243	3	0	1	2	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	t0007	244	2	0	0	1	0	1	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	t0008	243	2	0	0	2	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	t0009	244	1	0	0	0	0	1	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	t0010	243	1	0	0	1	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	t0011	244	1	1	0	0	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	t0012	244	1	0	0	1	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	t0013	242	1	1	0	0	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	t0014	243	1	0	0	1	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS2_chr18_36789108_36834002	0/0	t0001	2931	70	10	11	32	5	12	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0002	2929	61	8	14	24	6	9	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	1/0	t0003	2933	29	2	8	12	0	6	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0004	2901	25	0	1	24	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/1	t0005	2911	18	1	9	0	2	5	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0006	2927	15	6	3	3	1	2	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0007	2913	13	0	0	12	0	1	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0008	2925	12	8	2	0	1	1	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0009	2933	8	8	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0010	2923	7	0	0	6	0	1	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0011	2935	5	2	0	3	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0012	2934	5	0	3	2	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0013	2935	5	4	1	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0014	2921	4	3	0	1	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0015	2917	4	2	0	2	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0016	2935	4	4	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0017	2929	4	4	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0018	2913	4	0	3	0	0	1	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0019	2930	3	0	2	0	0	1	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0020	2939	2	0	0	2	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0021	2933	2	0	0	2	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0022	2937	2	2	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0023	2933	2	1	1	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0024	2931	2	2	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0025	2907	2	2	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0026	2933	1	0	0	1	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0027	2939	1	0	0	0	0	1	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0028	2929	1	0	0	0	0	1	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0029	2933	1	0	0	1	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0030	2929	1	0	0	1	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0031	2925	1	1	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0032	2901	1	0	1	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002