JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPGS2_chr18_36789108_36834002	0/0	t0033	2927	1	1	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0034	2919	1	1	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0035	2937	1	0	0	1	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0036	2933	1	1	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0037	2915	1	0	0	0	0	1	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0038	2929	1	1	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0039	2932	1	0	0	1	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0040	2937	1	1	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0041	2925	1	1	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0042	2917	1	1	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0043	2935	1	1	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0044	2933	1	1	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0045	2929	1	0	0	0	0	1	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0046	2931	1	0	0	1	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0047	2931	1	0	0	0	1	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0048	2937	1	0	0	1	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0049	2927	1	0	0	1	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0050	2914	1	0	1	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0051	2909	1	0	0	0	0	1	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0052	2909	1	1	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	t0053	2901	1	0	0	1	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPH1_chr11_18012555_18051269	0/1	t0001	3490	53	2	10	33	2	5	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0002	3481	45	8	4	25	5	3	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0003	3491	40	2	9	24	1	4	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0004	3482	22	3	4	9	0	6	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0005	3480	19	0	9	8	1	1	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0006	3491	13	3	4	4	0	2	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0007	3472	11	10	1	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0008	3489	11	3	4	1	1	2	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0009	3490	10	1	4	3	1	1	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0010	3487	9	0	0	9	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0011	3486	8	0	0	8	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0012	3491	8	8	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0013	3489	7	7	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0014	3490	7	6	1	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0015	3478	7	0	0	7	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0016	3494	6	5	0	0	1	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0017	3491	6	0	5	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0018	3479	6	0	3	0	2	1	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0019	3481	6	0	1	4	0	1	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0020	3492	6	0	3	3	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0021	3474	5	0	0	5	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0022	3488	5	4	1	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0023	3480	5	0	0	5	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0024	3490	5	1	1	3	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0025	3488	4	1	0	2	0	1	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	1/0	t0026	3492	4	3	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0027	3467	4	4	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0028	3495	3	3	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0029	3479	3	0	0	1	0	2	copy fasta	TPH1	chr11	18012555	18051269