JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPH1_chr11_18012555_18051269	0/0	t0030	3480	3	1	1	0	0	1	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0031	3489	3	0	0	1	1	1	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0032	3479	3	0	0	3	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0033	3477	2	2	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0034	3490	2	2	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0035	3493	2	1	1	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0036	3481	2	0	0	2	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0037	3493	2	0	0	2	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0038	3475	1	0	0	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0039	3481	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0040	3490	1	0	0	0	0	1	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0041	3481	1	0	0	0	0	1	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0042	3490	1	0	0	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0043	3491	1	0	0	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0044	3480	1	0	0	0	0	1	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0045	3490	1	0	0	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0046	3474	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0047	3490	1	0	0	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0048	3495	1	0	0	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0049	3475	1	0	0	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0050	3477	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0051	3478	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0052	3478	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0053	3478	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0054	3479	1	0	0	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0055	3494	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0056	3461	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0057	3481	1	0	0	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0058	3482	1	0	0	0	0	1	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0059	3482	1	0	1	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0060	3481	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0061	3470	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0062	3471	1	0	0	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0063	3472	1	0	0	0	0	1	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0064	3473	1	0	0	0	0	1	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0065	3475	1	0	0	0	1	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0066	3476	1	0	1	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0067	3476	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0068	3478	1	0	0	0	0	1	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0069	3479	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0070	3491	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0071	3494	1	0	0	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0072	3494	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0073	3494	1	0	0	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0074	3481	1	0	0	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0075	3482	1	0	1	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0076	3477	1	0	0	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0077	3488	1	0	0	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	t0078	3481	1	0	1	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH2_chr12_71933845_72037440	1/1	t0001	888	239	92	45	74	9	17	copy fasta	TPH2	chr12	71933845	72037440