JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPH2_chr12_71933845_72037440	0/0	t0002	888	49	1	13	27	2	6	copy fasta	TPH2	chr12	71933845	72037440
TPH2_chr12_71933845_72037440	0/0	t0003	888	35	2	6	19	3	5	copy fasta	TPH2	chr12	71933845	72037440
TPH2_chr12_71933845_72037440	0/0	t0004	888	5	0	0	5	0	0	copy fasta	TPH2	chr12	71933845	72037440
TPH2_chr12_71933845_72037440	0/0	t0005	888	3	0	1	2	0	0	copy fasta	TPH2	chr12	71933845	72037440
TPH2_chr12_71933845_72037440	0/0	t0006	888	1	0	0	1	0	0	copy fasta	TPH2	chr12	71933845	72037440
TPH2_chr12_71933845_72037440	0/0	t0007	888	1	1	0	0	0	0	copy fasta	TPH2	chr12	71933845	72037440
TPH2_chr12_71933845_72037440	0/0	t0008	888	1	0	1	0	0	0	copy fasta	TPH2	chr12	71933845	72037440
TPI1_chr12_6862531_6875948	0/0	t0001	602	297	51	63	125	15	43	copy fasta	TPI1	chr12	6862531	6875948
TPI1_chr12_6862531_6875948	0/0	t0002	602	29	0	0	29	0	0	copy fasta	TPI1	chr12	6862531	6875948
TPI1_chr12_6862531_6875948	0/0	t0003	603	26	19	3	4	0	0	copy fasta	TPI1	chr12	6862531	6875948
TPI1_chr12_6862531_6875948	0/0	t0004	603	16	13	0	2	0	1	copy fasta	TPI1	chr12	6862531	6875948
TPI1_chr12_6862531_6875948	0/0	t0005	602	6	0	0	6	0	0	copy fasta	TPI1	chr12	6862531	6875948
TPI1_chr12_6862531_6875948	0/0	t0006	603	4	2	2	0	0	0	copy fasta	TPI1	chr12	6862531	6875948
TPI1_chr12_6862531_6875948	0/0	t0007	602	2	0	0	2	0	0	copy fasta	TPI1	chr12	6862531	6875948
TPI1_chr12_6862531_6875948	0/0	t0008	602	1	0	0	0	1	0	copy fasta	TPI1	chr12	6862531	6875948
TPI1_chr12_6862531_6875948	0/0	t0009	602	1	1	0	0	0	0	copy fasta	TPI1	chr12	6862531	6875948
TPI1_chr12_6862531_6875948	0/0	t0010	602	1	1	0	0	0	0	copy fasta	TPI1	chr12	6862531	6875948
TPI1_chr12_6862531_6875948	0/0	t0011	602	1	1	0	0	0	0	copy fasta	TPI1	chr12	6862531	6875948
TPK1_chr7_144446941_144841053	1/1	t0001	1708	83	45	18	7	1	10	copy fasta	TPK1	chr7	144446941	144841053
TPK1_chr7_144446941_144841053	0/0	t0002	1708	15	14	1	0	0	0	copy fasta	TPK1	chr7	144446941	144841053
TPK1_chr7_144446941_144841053	0/0	t0003	1724	7	7	0	0	0	0	copy fasta	TPK1	chr7	144446941	144841053
TPK1_chr7_144446941_144841053	0/0	t0004	1708	3	3	0	0	0	0	copy fasta	TPK1	chr7	144446941	144841053
TPK1_chr7_144446941_144841053	0/0	t0005	1708	3	0	2	0	1	0	copy fasta	TPK1	chr7	144446941	144841053
TPK1_chr7_144446941_144841053	0/0	t0006	1708	2	2	0	0	0	0	copy fasta	TPK1	chr7	144446941	144841053
TPK1_chr7_144446941_144841053	0/0	t0007	1708	2	2	0	0	0	0	copy fasta	TPK1	chr7	144446941	144841053
TPK1_chr7_144446941_144841053	0/0	t0008	1708	1	0	0	1	0	0	copy fasta	TPK1	chr7	144446941	144841053
TPK1_chr7_144446941_144841053	0/0	t0009	1708	1	0	1	0	0	0	copy fasta	TPK1	chr7	144446941	144841053
TPK1_chr7_144446941_144841053	0/0	t0010	1708	1	1	0	0	0	0	copy fasta	TPK1	chr7	144446941	144841053
TPM1_chr15_63037747_63071178	1/1	t0001	363	384	94	68	168	12	40	copy fasta	TPM1	chr15	63037747	63071178
TPM1_chr15_63037747_63071178	0/0	t0002	363	14	4	4	0	2	4	copy fasta	TPM1	chr15	63037747	63071178
TPM1_chr15_63037747_63071178	0/0	t0003	363	1	1	0	0	0	0	copy fasta	TPM1	chr15	63037747	63071178
TPM1_chr15_63037747_63071178	0/0	t0004	363	1	1	0	0	0	0	copy fasta	TPM1	chr15	63037747	63071178
TPM2_chr9_35677932_35694925	1/1	t0001	336	410	87	68	194	15	44	copy fasta	TPM2	chr9	35677932	35694925
TPM2_chr9_35677932_35694925	0/0	t0002	336	15	1	4	5	1	4	copy fasta	TPM2	chr9	35677932	35694925
TPM2_chr9_35677932_35694925	0/0	t0003	336	10	8	2	0	0	0	copy fasta	TPM2	chr9	35677932	35694925
TPM2_chr9_35677932_35694925	0/0	t0004	336	1	0	0	1	0	0	copy fasta	TPM2	chr9	35677932	35694925
TPM3_chr1_154156813_154197100	0/0	t0001	6206	74	14	7	43	3	7	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0002	6209	68	2	16	39	3	8	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	1/1	t0003	6207	53	8	16	11	4	12	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0004	6208	25	7	8	7	1	2	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0005	6207	13	3	1	9	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0006	6207	10	0	0	10	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0007	6210	10	0	3	6	0	1	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0008	6205	7	5	0	2	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0009	6208	6	6	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0010	6209	5	5	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0011	6206	5	4	1	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0012	6209	5	5	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0013	6208	5	1	2	2	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0014	6211	4	4	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100