JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPM3_chr1_154156813_154197100	0/0	t0015	6209	4	2	1	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0016	6207	4	4	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0017	6208	3	0	1	1	0	1	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0018	6209	3	0	2	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0019	6206	3	3	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0020	6208	3	0	0	0	0	3	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0021	6208	3	1	2	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0022	6208	3	3	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0023	6208	3	0	0	3	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0024	6208	2	0	1	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0025	6209	2	0	2	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0026	6212	2	2	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0027	6206	2	0	0	2	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0028	6207	2	0	0	2	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0029	6206	2	2	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0030	6207	2	0	1	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0031	6209	2	0	0	1	0	1	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0032	6210	2	2	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0033	6211	1	0	0	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0034	6208	1	1	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0035	6210	1	1	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0036	6205	1	1	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0037	6206	1	0	0	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0038	6206	1	0	0	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0039	6209	1	0	0	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0040	6209	1	0	1	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0041	6210	1	0	0	0	0	1	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0042	6209	1	0	0	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0043	6209	1	0	0	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0044	6210	1	0	0	0	0	1	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0045	6210	1	0	0	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0046	6210	1	0	0	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0047	6207	1	0	0	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0048	6210	1	1	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0049	6206	1	0	0	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0050	6207	1	1	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0051	6206	1	1	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0052	6206	1	0	0	0	1	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0053	6206	1	0	0	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0054	6208	1	0	0	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0055	6210	1	1	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0056	6208	1	0	0	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0057	6207	1	0	0	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0058	6209	1	1	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0059	6210	1	1	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0060	6206	1	0	1	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0061	6207	1	0	0	0	0	1	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0062	6207	1	1	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0063	6206	1	1	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0064	6208	1	1	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100