JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPM3_chr1_154156813_154197100	0/0	t0065	6209	1	1	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0066	6209	1	0	1	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	t0067	6207	1	0	1	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM4_chr19_16071495_16108002	1/1	t0001	1728	298	44	53	137	18	44	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	t0002	1728	20	14	6	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	t0003	1729	16	13	3	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	t0004	1728	12	12	0	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	t0005	1728	11	0	1	10	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	t0006	1728	5	0	5	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	t0007	1728	3	2	1	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	t0008	1728	3	3	0	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	t0009	1728	1	1	0	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	t0010	1728	1	1	0	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	t0011	1728	1	0	1	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	t0012	1728	1	1	0	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	t0013	1728	1	0	0	1	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	t0014	1728	1	0	0	1	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	t0015	1728	1	0	1	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	t0016	1728	1	0	1	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	t0017	1728	1	1	0	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	t0018	1728	1	0	0	1	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPMT_chr6_18123311_18160077	0/1	t0001	2447	265	35	49	141	10	29	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	1/0	t0002	2447	98	11	15	52	5	14	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0003	2447	43	39	4	0	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0004	2447	4	0	4	0	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0005	2447	4	4	0	0	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0006	2448	3	3	0	0	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0007	2447	3	0	0	1	0	2	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0008	2447	3	0	3	0	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0009	2447	2	0	0	2	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0010	2447	2	2	0	0	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0011	2447	1	1	0	0	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0012	2447	1	0	0	0	0	1	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0013	2447	1	0	0	1	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0014	2447	1	0	0	1	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0015	2447	1	0	0	1	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0016	2447	1	1	0	0	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0017	2447	1	1	0	0	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0018	2447	1	1	0	0	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0019	2447	1	0	0	1	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0020	2447	1	0	1	0	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	t0021	2447	1	0	0	0	1	0	copy fasta	TPMT	chr6	18123311	18160077
TPO_chr2_1408463_1548673	0/0	t0001	1283	37	4	10	16	3	4	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	t0002	1283	28	4	7	11	1	5	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	t0003	1283	20	8	9	1	0	2	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/1	t0004	1283	15	2	1	8	1	2	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	1/0	t0005	1283	8	1	0	4	0	2	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	t0006	1283	6	4	1	1	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	t0007	1283	5	0	1	3	0	1	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	t0008	1283	3	0	2	1	0	0	copy fasta	TPO	chr2	1408463	1548673