JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPO_chr2_1408463_1548673	0/0	t0009	1283	2	0	0	2	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	t0010	1283	1	0	1	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	t0011	1283	1	0	0	0	1	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	t0012	1283	1	0	0	1	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	t0013	1283	1	1	0	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	t0014	1283	1	1	0	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	t0015	1283	1	1	0	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPP1_chr11_6607768_6624422	0/1	t0001	1801	174	18	47	78	13	17	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0002	1801	156	56	18	68	1	13	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	1/0	t0003	1801	60	8	17	26	0	8	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0004	1801	15	5	1	5	0	4	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0005	1801	4	0	0	4	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0006	1800	3	0	0	3	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0007	1801	2	2	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0008	1786	2	2	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0009	1786	2	0	0	0	2	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0010	1801	2	0	0	1	0	1	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0011	1801	2	0	0	2	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0012	1801	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0013	1801	1	0	0	0	0	1	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0014	1801	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0015	1801	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0016	1801	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0017	1786	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0018	1801	1	0	1	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0019	1801	1	0	1	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0020	1801	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0021	1801	1	0	0	1	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0022	1801	1	0	0	1	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0023	1801	1	0	0	1	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0024	1801	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	t0025	1801	1	0	1	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP2_chr13_102591986_102684958	0/0	t0001	1695	82	7	20	40	3	12	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	t0002	1686	77	20	4	49	0	4	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	t0003	1690	71	19	22	17	5	8	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	t0004	1693	46	11	9	24	1	1	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	1/0	t0005	1696	37	2	3	27	0	4	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/1	t0006	1687	22	6	9	0	1	5	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	t0007	1692	6	0	4	0	0	2	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	t0008	1692	5	3	0	2	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	t0009	1691	4	0	2	0	0	2	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	t0010	1691	3	3	0	0	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	t0011	1696	2	1	0	1	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	t0012	1692	2	2	0	0	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	t0013	1690	1	0	0	0	0	1	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	t0014	1690	1	0	0	0	0	1	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	t0015	1692	1	1	0	0	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	t0016	1686	1	1	0	0	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	t0017	1686	1	0	0	1	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	t0018	1695	1	0	0	1	0	0	copy fasta	TPP2	chr13	102591986	102684958