JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPP2_chr13_102591986_102684958	0/0	t0019	1695	1	0	0	1	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	t0020	1695	1	0	0	1	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	t0021	1696	1	0	1	0	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPPP2_chr14_21025217_21037815	0/1	t0001	896	162	7	29	110	8	7	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0002	897	119	49	20	36	5	9	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0003	896	86	2	20	55	2	7	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	1/0	t0004	896	40	10	9	3	2	15	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0005	896	38	15	0	21	1	1	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0006	896	8	3	4	0	0	1	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0007	896	7	7	0	0	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0008	896	4	0	0	0	0	4	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0009	897	3	3	0	0	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0010	897	3	0	0	3	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0011	896	2	0	1	0	0	1	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0012	896	1	0	1	0	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0013	896	1	0	0	1	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0014	896	1	0	0	0	0	1	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0015	896	1	1	0	0	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0016	896	1	0	0	1	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0017	896	1	0	0	1	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0018	896	1	1	0	0	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0019	896	1	0	0	1	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0020	897	1	1	0	0	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	t0021	896	1	1	0	0	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP3_chr16_67384809_67398498	1/1	t0001	491	225	30	53	97	10	33	copy fasta	TPPP3	chr16	67384809	67398498
TPPP3_chr16_67384809_67398498	0/0	t0002	491	70	54	5	0	2	9	copy fasta	TPPP3	chr16	67384809	67398498
TPPP3_chr16_67384809_67398498	0/0	t0003	491	3	3	0	0	0	0	copy fasta	TPPP3	chr16	67384809	67398498
TPPP3_chr16_67384809_67398498	0/0	t0004	491	1	1	0	0	0	0	copy fasta	TPPP3	chr16	67384809	67398498
TPPP3_chr16_67384809_67398498	0/0	t0005	491	1	0	0	1	0	0	copy fasta	TPPP3	chr16	67384809	67398498
TPPP_chr5_654862_698352	0/0	t0001	5320	67	1	19	34	5	8	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0002	5383	60	3	6	50	1	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0003	5309	49	1	12	30	1	5	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0004	5316	26	21	2	0	1	2	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0005	5383	12	0	1	11	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0006	5215	12	12	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0007	5284	10	10	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0008	5984	9	0	3	6	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0009	5309	9	9	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0010	5893	8	0	4	0	1	3	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0011	5893	7	0	1	0	1	5	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0012	5285	6	0	2	4	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0013	5223	5	4	1	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0014	5322	5	0	0	4	0	1	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0015	5387	5	0	4	0	1	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0016	5385	5	0	0	5	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0017	5383	4	4	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0018	5383	4	4	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0019	5862	3	0	0	3	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0020	5384	3	0	0	0	0	3	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0021	5384	3	0	3	0	0	0	copy fasta	TPPP	chr5	654862	698352