JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPPP_chr5_654862_698352	0/0	t0022	5309	3	0	0	3	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0023	5311	3	0	0	2	0	1	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0024	5275	3	3	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0025	5309	3	0	1	0	0	2	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0026	5318	3	0	0	3	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0027	5895	2	0	2	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0028	5320	2	0	1	0	0	1	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0029	5383	2	0	2	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0030	5893	2	0	1	0	0	1	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0031	5316	2	2	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0032	5320	2	0	0	0	0	2	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0033	5285	2	2	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0034	5385	2	0	0	2	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0035	5383	2	0	2	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0036	5309	2	0	0	0	2	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0037	5320	2	0	0	0	2	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0038	5383	1	0	1	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0039	5893	1	0	1	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0040	5895	1	0	1	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0041	5893	1	0	0	0	0	1	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0042	5383	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0043	5286	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0044	5284	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0045	5407	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0046	5322	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0047	5320	1	0	0	0	0	1	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0048	5308	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0049	5381	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0050	5352	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0051	5354	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0052	5354	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0053	5320	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0054	5352	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0055	5320	1	0	0	0	0	1	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0056	5320	1	0	1	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0057	5316	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0058	5320	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	1/0	t0059	5320	1	0	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0060	5320	1	0	0	0	0	1	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0061	5322	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0062	5320	1	0	0	0	0	1	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0063	5320	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0064	5320	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0065	5320	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0066	5283	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0067	5320	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0068	5316	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0069	5383	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0070	5383	1	0	1	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0071	5383	1	0	0	0	0	1	copy fasta	TPPP	chr5	654862	698352