Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTBD7_chr14_93232550_93338036	0/0	t0040	5046	1	0	0	1	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0041	5047	1	0	0	0	1	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0042	5048	1	0	0	1	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0043	5033	1	1	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0044	5044	1	0	0	1	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0045	5045	1	0	0	1	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0046	5044	1	1	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0047	5043	1	1	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0048	5044	1	0	1	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0049	5044	1	1	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0050	5044	1	1	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0051	5045	1	1	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0052	5045	1	1	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0053	5045	1	1	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0054	5045	1	1	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0055	5046	1	0	0	1	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0056	5048	1	0	0	1	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0057	5045	1	1	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0058	5041	1	1	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0059	5044	1	0	0	0	0	1	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0060	5042	1	0	0	0	1	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0061	5043	1	0	0	1	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0062	5043	1	1	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0063	5043	1	0	0	1	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	t0064	5042	1	0	0	1	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD8_chr1_92075345_92189723	1/1	t0001	621	136	47	29	28	8	22	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	t0002	621	11	11	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	t0003	621	6	6	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	t0004	621	4	4	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	t0005	621	1	0	1	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD9_chr6_38163451_38644929	0/0	t0001	6666	5	1	3	0	1	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0002	6666	5	0	2	2	0	1	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0003	6689	4	0	0	3	1	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0004	6656	4	4	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0005	6672	3	0	0	3	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0006	6666	3	0	0	3	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0007	6666	3	0	1	0	0	2	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0008	6665	3	0	3	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0009	6657	3	0	1	0	1	1	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0010	6668	2	0	0	0	0	2	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0011	6666	2	0	1	0	0	1	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0012	6691	2	1	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0013	6689	2	2	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0014	6686	2	0	0	1	0	1	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0015	6691	2	1	0	0	0	1	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0016	6687	2	0	2	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0017	6685	2	0	2	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0018	6688	2	0	2	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0019	6690	2	0	1	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0020	6687	2	0	0	2	0	0	copy fasta	BTBD9	chr6	38163451	38644929